Strain Fitness in Variovorax sp. SCN45 around GFF2530

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2528 and GFF2529 overlap by 1 nucleotidesGFF2529 and GFF2530 are separated by 82 nucleotidesGFF2530 and GFF2531 are separated by 238 nucleotidesGFF2531 and GFF2532 are separated by 22 nucleotides GFF2528 - ABC transporter, ATP-binding protein PA3838, at 587,794 to 588,588 GFF2528 GFF2529 - ABC transporter, permease protein PA3837, at 588,588 to 589,484 GFF2529 GFF2530 - ABC transporter, substrate-binding protein PA3836, at 589,567 to 590,511 GFF2530 GFF2531 - Transcriptional regulator, AsnC family, at 590,750 to 591,226 GFF2531 GFF2532 - Potassium efflux system KefA protein / Small-conductance mechanosensitive channel, at 591,249 to 593,714 GFF2532 Position (kb) 589 590 591Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 588.628 kb on + strandat 588.628 kb on + strandat 588.629 kb on - strandat 588.629 kb on - strandat 588.629 kb on - strandat 588.629 kb on - strandat 588.739 kb on + strand, within GFF2529at 588.739 kb on + strand, within GFF2529at 589.189 kb on + strand, within GFF2529at 589.189 kb on + strand, within GFF2529at 589.189 kb on + strand, within GFF2529at 589.189 kb on + strand, within GFF2529at 589.189 kb on + strand, within GFF2529at 589.189 kb on + strand, within GFF2529at 589.190 kb on - strand, within GFF2529at 589.190 kb on - strand, within GFF2529at 589.190 kb on - strand, within GFF2529at 589.190 kb on - strand, within GFF2529at 589.190 kb on - strand, within GFF2529at 589.190 kb on - strand, within GFF2529at 589.190 kb on - strand, within GFF2529at 589.190 kb on - strand, within GFF2529at 589.190 kb on - strand, within GFF2529at 589.413 kb on + strandat 589.413 kb on + strandat 589.413 kb on + strandat 589.413 kb on + strandat 589.413 kb on + strandat 589.413 kb on + strandat 589.413 kb on + strandat 589.413 kb on + strandat 589.413 kb on + strandat 589.414 kb on - strandat 589.414 kb on - strandat 589.414 kb on - strandat 589.414 kb on - strandat 589.414 kb on - strandat 589.440 kb on + strandat 589.441 kb on - strandat 589.568 kb on + strandat 589.568 kb on + strandat 589.568 kb on + strandat 589.568 kb on + strandat 589.568 kb on + strandat 589.569 kb on - strandat 589.569 kb on - strandat 589.569 kb on - strandat 589.569 kb on - strandat 589.754 kb on + strand, within GFF2530at 589.754 kb on + strand, within GFF2530at 589.754 kb on + strand, within GFF2530at 589.755 kb on - strand, within GFF2530at 589.755 kb on - strand, within GFF2530at 589.755 kb on - strand, within GFF2530at 589.755 kb on - strand, within GFF2530at 589.854 kb on - strand, within GFF2530at 589.889 kb on + strand, within GFF2530at 589.889 kb on + strand, within GFF2530at 589.889 kb on + strand, within GFF2530at 589.889 kb on + strand, within GFF2530at 589.889 kb on + strand, within GFF2530at 589.889 kb on + strand, within GFF2530at 589.890 kb on - strand, within GFF2530at 589.890 kb on - strand, within GFF2530at 589.890 kb on - strand, within GFF2530at 589.890 kb on - strand, within GFF2530at 589.890 kb on - strand, within GFF2530at 589.890 kb on - strand, within GFF2530at 590.041 kb on + strand, within GFF2530at 590.042 kb on + strand, within GFF2530at 590.042 kb on + strand, within GFF2530at 590.042 kb on + strand, within GFF2530at 590.042 kb on + strand, within GFF2530at 590.042 kb on + strand, within GFF2530at 590.042 kb on + strand, within GFF2530at 590.042 kb on + strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.043 kb on - strand, within GFF2530at 590.198 kb on + strand, within GFF2530at 590.198 kb on + strand, within GFF2530at 590.199 kb on - strand, within GFF2530at 590.199 kb on - strand, within GFF2530at 590.199 kb on - strand, within GFF2530at 590.199 kb on - strand, within GFF2530at 590.199 kb on - strand, within GFF2530at 590.288 kb on + strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.289 kb on - strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.339 kb on + strand, within GFF2530at 590.340 kb on - strand, within GFF2530at 590.340 kb on - strand, within GFF2530at 590.340 kb on - strand, within GFF2530at 590.340 kb on - strand, within GFF2530at 590.340 kb on - strand, within GFF2530at 590.370 kb on - strand, within GFF2530at 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.549 kb on + strandat 590.550 kb on - strandat 590.550 kb on - strandat 590.550 kb on - strandat 590.550 kb on - strandat 590.550 kb on - strandat 590.550 kb on - strandat 590.550 kb on - strandat 590.550 kb on - strandat 590.550 kb on - strandat 590.659 kb on + strandat 590.660 kb on - strandat 590.660 kb on - strandat 590.660 kb on - strandat 590.660 kb on - strandat 590.660 kb on - strandat 590.660 kb on - strandat 590.667 kb on - strandat 590.667 kb on - strandat 590.679 kb on + strandat 590.680 kb on - strandat 590.680 kb on - strandat 590.918 kb on + strand, within GFF2531at 590.918 kb on + strand, within GFF2531at 590.918 kb on + strand, within GFF2531at 591.056 kb on + strand, within GFF2531at 591.056 kb on + strand, within GFF2531at 591.056 kb on + strand, within GFF2531at 591.056 kb on + strand, within GFF2531at 591.056 kb on + strand, within GFF2531at 591.056 kb on + strand, within GFF2531at 591.057 kb on - strand, within GFF2531at 591.057 kb on - strand, within GFF2531at 591.057 kb on - strand, within GFF2531at 591.057 kb on - strand, within GFF2531at 591.057 kb on - strand, within GFF2531at 591.057 kb on - strand, within GFF2531at 591.080 kb on + strand, within GFF2531at 591.080 kb on + strand, within GFF2531at 591.080 kb on + strand, within GFF2531at 591.080 kb on + strand, within GFF2531at 591.080 kb on + strand, within GFF2531at 591.080 kb on + strand, within GFF2531at 591.080 kb on + strand, within GFF2531at 591.080 kb on + strand, within GFF2531at 591.081 kb on - strand, within GFF2531at 591.081 kb on - strand, within GFF2531at 591.081 kb on - strand, within GFF2531at 591.081 kb on - strand, within GFF2531at 591.081 kb on - strand, within GFF2531at 591.433 kb on + strandat 591.433 kb on + strandat 591.433 kb on + strandat 591.434 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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588,628 + -0.3
588,628 + -0.1
588,629 - -0.3
588,629 - -0.5
588,629 - -1.3
588,629 - +0.0
588,739 + GFF2529 0.17 +2.5
588,739 + GFF2529 0.17 -0.6
589,189 + GFF2529 0.67 -1.3
589,189 + GFF2529 0.67 +0.4
589,189 + GFF2529 0.67 +1.2
589,189 + GFF2529 0.67 +0.8
589,189 + GFF2529 0.67 -0.1
589,189 + GFF2529 0.67 +0.0
589,190 - GFF2529 0.67 -0.4
589,190 - GFF2529 0.67 -1.4
589,190 - GFF2529 0.67 -0.9
589,190 - GFF2529 0.67 +0.6
589,190 - GFF2529 0.67 -2.5
589,190 - GFF2529 0.67 -0.8
589,190 - GFF2529 0.67 -1.6
589,190 - GFF2529 0.67 -2.3
589,190 - GFF2529 0.67 -0.1
589,413 + -2.6
589,413 + +0.7
589,413 + -0.5
589,413 + +1.1
589,413 + +0.9
589,413 + +0.5
589,413 + +0.1
589,413 + -1.4
589,413 + +0.2
589,414 - +0.7
589,414 - -1.9
589,414 - -0.2
589,414 - +1.4
589,414 - -0.8
589,440 + +0.7
589,441 - +0.6
589,568 + -1.4
589,568 + +0.3
589,568 + -0.4
589,568 + -0.5
589,568 + -2.6
589,569 - +1.2
589,569 - +0.2
589,569 - -0.7
589,569 - -0.4
589,754 + GFF2530 0.20 -0.1
589,754 + GFF2530 0.20 +0.9
589,754 + GFF2530 0.20 -1.2
589,755 - GFF2530 0.20 +1.5
589,755 - GFF2530 0.20 -0.3
589,755 - GFF2530 0.20 -0.7
589,755 - GFF2530 0.20 +0.9
589,854 - GFF2530 0.30 +1.2
589,889 + GFF2530 0.34 -1.0
589,889 + GFF2530 0.34 -0.6
589,889 + GFF2530 0.34 +0.0
589,889 + GFF2530 0.34 -0.4
589,889 + GFF2530 0.34 -0.6
589,889 + GFF2530 0.34 +0.2
589,890 - GFF2530 0.34 +0.4
589,890 - GFF2530 0.34 +0.3
589,890 - GFF2530 0.34 +1.4
589,890 - GFF2530 0.34 -0.1
589,890 - GFF2530 0.34 +0.1
589,890 - GFF2530 0.34 -0.2
590,041 + GFF2530 0.50 -1.0
590,042 + GFF2530 0.50 +0.6
590,042 + GFF2530 0.50 -1.0
590,042 + GFF2530 0.50 +0.0
590,042 + GFF2530 0.50 -0.2
590,042 + GFF2530 0.50 -1.7
590,042 + GFF2530 0.50 -2.1
590,042 + GFF2530 0.50 +0.3
590,043 - GFF2530 0.50 -1.0
590,043 - GFF2530 0.50 +1.7
590,043 - GFF2530 0.50 +2.5
590,043 - GFF2530 0.50 -0.3
590,043 - GFF2530 0.50 +0.0
590,043 - GFF2530 0.50 -0.9
590,043 - GFF2530 0.50 -1.8
590,043 - GFF2530 0.50 -1.1
590,043 - GFF2530 0.50 +1.1
590,043 - GFF2530 0.50 +0.1
590,043 - GFF2530 0.50 -0.6
590,043 - GFF2530 0.50 -0.8
590,198 + GFF2530 0.67 +1.0
590,198 + GFF2530 0.67 -0.8
590,199 - GFF2530 0.67 +1.7
590,199 - GFF2530 0.67 -3.5
590,199 - GFF2530 0.67 -0.6
590,199 - GFF2530 0.67 -1.0
590,199 - GFF2530 0.67 +0.0
590,288 + GFF2530 0.76 -0.8
590,289 - GFF2530 0.76 +1.6
590,289 - GFF2530 0.76 +0.3
590,289 - GFF2530 0.76 -0.2
590,289 - GFF2530 0.76 +1.8
590,289 - GFF2530 0.76 -0.3
590,289 - GFF2530 0.76 -0.4
590,289 - GFF2530 0.76 +0.6
590,289 - GFF2530 0.76 -2.6
590,289 - GFF2530 0.76 -1.6
590,339 + GFF2530 0.82 -1.0
590,339 + GFF2530 0.82 +0.7
590,339 + GFF2530 0.82 -2.4
590,339 + GFF2530 0.82 -0.1
590,339 + GFF2530 0.82 -1.3
590,339 + GFF2530 0.82 +0.0
590,339 + GFF2530 0.82 -1.1
590,339 + GFF2530 0.82 -0.5
590,340 - GFF2530 0.82 -1.2
590,340 - GFF2530 0.82 -0.1
590,340 - GFF2530 0.82 +0.3
590,340 - GFF2530 0.82 -0.3
590,340 - GFF2530 0.82 -1.1
590,370 - GFF2530 0.85 -0.4
590,549 + -0.6
590,549 + -0.6
590,549 + -0.4
590,549 + -0.1
590,549 + -0.6
590,549 + -1.3
590,549 + -0.6
590,549 + -1.3
590,549 + -0.8
590,549 + -2.4
590,549 + +1.3
590,549 + +0.4
590,550 - -0.1
590,550 - +0.8
590,550 - +0.8
590,550 - +0.0
590,550 - -0.1
590,550 - -1.3
590,550 - +0.5
590,550 - -0.1
590,550 - +0.5
590,659 + -2.1
590,660 - +1.1
590,660 - -0.4
590,660 - +0.0
590,660 - +0.9
590,660 - -0.4
590,660 - -0.5
590,667 - +0.6
590,667 - +1.0
590,679 + -0.7
590,680 - +0.5
590,680 - -0.2
590,918 + GFF2531 0.35 +0.4
590,918 + GFF2531 0.35 -0.5
590,918 + GFF2531 0.35 +2.5
591,056 + GFF2531 0.64 +1.3
591,056 + GFF2531 0.64 -2.4
591,056 + GFF2531 0.64 -0.0
591,056 + GFF2531 0.64 -1.5
591,056 + GFF2531 0.64 +1.7
591,056 + GFF2531 0.64 -0.3
591,057 - GFF2531 0.64 -0.9
591,057 - GFF2531 0.64 +1.3
591,057 - GFF2531 0.64 -0.4
591,057 - GFF2531 0.64 +0.3
591,057 - GFF2531 0.64 +0.6
591,057 - GFF2531 0.64 +2.0
591,080 + GFF2531 0.69 -0.8
591,080 + GFF2531 0.69 +0.8
591,080 + GFF2531 0.69 -0.2
591,080 + GFF2531 0.69 +0.9
591,080 + GFF2531 0.69 -1.0
591,080 + GFF2531 0.69 +0.3
591,080 + GFF2531 0.69 +0.4
591,080 + GFF2531 0.69 +0.3
591,081 - GFF2531 0.69 -0.9
591,081 - GFF2531 0.69 -0.0
591,081 - GFF2531 0.69 +0.5
591,081 - GFF2531 0.69 +0.3
591,081 - GFF2531 0.69 +1.3
591,433 + -0.6
591,433 + -0.0
591,433 + +1.2
591,434 - -0.1

Or see this region's nucleotide sequence