Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2525 and GFF2526 are separated by 112 nucleotides GFF2526 and GFF2527 are separated by 7 nucleotides GFF2527 and GFF2528 overlap by 1 nucleotides GFF2528 and GFF2529 overlap by 1 nucleotides GFF2529 and GFF2530 are separated by 82 nucleotides
GFF2525 - Glutamyl-tRNA reductase (EC 1.2.1.70), at 585,597 to 586,868
GFF2525
GFF2526 - no description, at 586,981 to 587,259
GFF2526
GFF2527 - GCN5-related N-acetyltransferase, at 587,267 to 587,794
GFF2527
GFF2528 - ABC transporter, ATP-binding protein PA3838, at 587,794 to 588,588
GFF2528
GFF2529 - ABC transporter, permease protein PA3837, at 588,588 to 589,484
GFF2529
GFF2530 - ABC transporter, substrate-binding protein PA3836, at 589,567 to 590,511
GFF2530
Position (kb) 587
588
589 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 586.878 kb on + strand at 586.879 kb on - strand at 586.880 kb on + strand at 586.881 kb on - strand at 586.881 kb on - strand at 586.881 kb on - strand at 586.881 kb on - strand at 586.928 kb on + strand at 586.928 kb on + strand at 586.928 kb on + strand at 586.928 kb on + strand at 586.929 kb on - strand at 586.929 kb on - strand at 586.929 kb on - strand at 586.929 kb on - strand at 586.929 kb on - strand at 586.929 kb on - strand at 586.939 kb on + strand at 586.939 kb on + strand at 586.939 kb on + strand at 586.939 kb on + strand at 586.939 kb on + strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 586.940 kb on - strand at 587.068 kb on + strand, within GFF2526 at 587.068 kb on + strand, within GFF2526 at 587.194 kb on + strand, within GFF2526 at 587.194 kb on + strand, within GFF2526 at 587.194 kb on + strand, within GFF2526 at 587.194 kb on + strand, within GFF2526 at 587.194 kb on + strand, within GFF2526 at 587.195 kb on - strand, within GFF2526 at 587.195 kb on - strand, within GFF2526 at 587.195 kb on - strand, within GFF2526 at 587.195 kb on - strand, within GFF2526 at 587.195 kb on - strand, within GFF2526 at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.295 kb on + strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.296 kb on - strand at 587.313 kb on + strand at 587.313 kb on + strand at 587.313 kb on + strand at 587.314 kb on - strand at 587.314 kb on - strand at 587.314 kb on - strand at 587.314 kb on - strand at 587.314 kb on - strand at 587.364 kb on + strand, within GFF2527 at 587.364 kb on + strand, within GFF2527 at 587.364 kb on + strand, within GFF2527 at 587.364 kb on + strand, within GFF2527 at 587.364 kb on + strand, within GFF2527 at 587.365 kb on - strand, within GFF2527 at 587.365 kb on - strand, within GFF2527 at 587.365 kb on - strand, within GFF2527 at 587.365 kb on - strand, within GFF2527 at 587.365 kb on - strand, within GFF2527 at 587.520 kb on + strand, within GFF2527 at 587.520 kb on + strand, within GFF2527 at 587.520 kb on + strand, within GFF2527 at 587.520 kb on + strand, within GFF2527 at 587.520 kb on + strand, within GFF2527 at 587.521 kb on - strand, within GFF2527 at 587.521 kb on - strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.604 kb on + strand, within GFF2527 at 587.605 kb on - strand, within GFF2527 at 587.605 kb on - strand, within GFF2527 at 587.605 kb on - strand, within GFF2527 at 587.706 kb on + strand, within GFF2527 at 587.707 kb on - strand, within GFF2527 at 587.707 kb on - strand, within GFF2527 at 587.945 kb on + strand, within GFF2528 at 587.946 kb on - strand, within GFF2528 at 587.946 kb on - strand, within GFF2528 at 588.628 kb on + strand at 588.628 kb on + strand at 588.629 kb on - strand at 588.629 kb on - strand at 588.629 kb on - strand at 588.629 kb on - strand at 588.739 kb on + strand, within GFF2529 at 588.739 kb on + strand, within GFF2529 at 589.189 kb on + strand, within GFF2529 at 589.189 kb on + strand, within GFF2529 at 589.189 kb on + strand, within GFF2529 at 589.189 kb on + strand, within GFF2529 at 589.189 kb on + strand, within GFF2529 at 589.189 kb on + strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.190 kb on - strand, within GFF2529 at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.413 kb on + strand at 589.414 kb on - strand at 589.414 kb on - strand at 589.414 kb on - strand at 589.414 kb on - strand at 589.414 kb on - strand at 589.440 kb on + strand at 589.441 kb on - strand at 589.568 kb on + strand at 589.568 kb on + strand at 589.568 kb on + strand at 589.568 kb on + strand at 589.568 kb on + strand at 589.569 kb on - strand at 589.569 kb on - strand at 589.569 kb on - strand at 589.569 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 586,878 + +2.4 586,879 - +0.1 586,880 + -1.4 586,881 - -1.3 586,881 - -0.7 586,881 - -0.7 586,881 - -1.0 586,928 + -1.6 586,928 + +0.0 586,928 + -1.2 586,928 + -1.3 586,929 - -1.8 586,929 - +0.2 586,929 - -1.4 586,929 - -2.0 586,929 - -0.1 586,929 - -0.5 586,939 + +0.3 586,939 + -2.7 586,939 + -0.1 586,939 + +1.0 586,939 + +2.0 586,940 - -0.9 586,940 - -0.9 586,940 - +2.6 586,940 - -0.6 586,940 - +1.5 586,940 - +1.4 586,940 - +0.3 586,940 - +0.3 586,940 - -0.6 586,940 - -0.3 586,940 - +0.6 586,940 - +0.4 587,068 + GFF2526 0.31 +0.7 587,068 + GFF2526 0.31 +0.4 587,194 + GFF2526 0.76 +0.1 587,194 + GFF2526 0.76 -2.1 587,194 + GFF2526 0.76 -0.3 587,194 + GFF2526 0.76 +0.8 587,194 + GFF2526 0.76 -1.1 587,195 - GFF2526 0.77 -1.8 587,195 - GFF2526 0.77 -1.3 587,195 - GFF2526 0.77 -0.6 587,195 - GFF2526 0.77 +1.7 587,195 - GFF2526 0.77 -1.0 587,295 + -1.6 587,295 + -1.5 587,295 + -1.1 587,295 + -0.1 587,295 + +0.7 587,295 + +0.7 587,295 + -1.1 587,295 + +0.9 587,295 + -0.2 587,295 + +0.0 587,295 + +0.2 587,295 + -0.1 587,295 + -0.6 587,295 + -0.2 587,296 - -1.3 587,296 - -2.0 587,296 - +0.9 587,296 - +1.3 587,296 - -1.4 587,296 - -1.3 587,296 - -0.4 587,296 - -0.8 587,296 - +0.5 587,296 - +0.4 587,296 - -0.7 587,313 + -2.3 587,313 + +0.0 587,313 + -1.1 587,314 - +1.9 587,314 - -0.7 587,314 - -1.0 587,314 - +1.8 587,314 - -1.0 587,364 + GFF2527 0.18 +1.1 587,364 + GFF2527 0.18 +0.4 587,364 + GFF2527 0.18 +0.1 587,364 + GFF2527 0.18 -0.5 587,364 + GFF2527 0.18 -0.2 587,365 - GFF2527 0.19 -0.1 587,365 - GFF2527 0.19 -0.8 587,365 - GFF2527 0.19 +0.7 587,365 - GFF2527 0.19 -0.0 587,365 - GFF2527 0.19 -3.1 587,520 + GFF2527 0.48 +0.5 587,520 + GFF2527 0.48 +0.1 587,520 + GFF2527 0.48 -0.9 587,520 + GFF2527 0.48 -0.3 587,520 + GFF2527 0.48 +1.7 587,521 - GFF2527 0.48 -1.3 587,521 - GFF2527 0.48 -0.2 587,604 + GFF2527 0.64 -1.3 587,604 + GFF2527 0.64 +1.0 587,604 + GFF2527 0.64 +1.0 587,604 + GFF2527 0.64 -0.6 587,604 + GFF2527 0.64 -0.5 587,604 + GFF2527 0.64 +0.0 587,604 + GFF2527 0.64 +0.4 587,605 - GFF2527 0.64 +0.4 587,605 - GFF2527 0.64 +0.1 587,605 - GFF2527 0.64 -2.1 587,706 + GFF2527 0.83 +0.0 587,707 - GFF2527 0.83 -0.7 587,707 - GFF2527 0.83 -0.8 587,945 + GFF2528 0.19 -1.7 587,946 - GFF2528 0.19 -0.6 587,946 - GFF2528 0.19 +0.2 588,628 + -0.3 588,628 + -0.1 588,629 - -0.3 588,629 - -0.5 588,629 - -1.3 588,629 - +0.0 588,739 + GFF2529 0.17 +2.5 588,739 + GFF2529 0.17 -0.6 589,189 + GFF2529 0.67 -1.3 589,189 + GFF2529 0.67 +0.4 589,189 + GFF2529 0.67 +1.2 589,189 + GFF2529 0.67 +0.8 589,189 + GFF2529 0.67 -0.1 589,189 + GFF2529 0.67 +0.0 589,190 - GFF2529 0.67 -0.4 589,190 - GFF2529 0.67 -1.4 589,190 - GFF2529 0.67 -0.9 589,190 - GFF2529 0.67 +0.6 589,190 - GFF2529 0.67 -2.5 589,190 - GFF2529 0.67 -0.8 589,190 - GFF2529 0.67 -1.6 589,190 - GFF2529 0.67 -2.3 589,190 - GFF2529 0.67 -0.1 589,413 + -2.6 589,413 + +0.7 589,413 + -0.5 589,413 + +1.1 589,413 + +0.9 589,413 + +0.5 589,413 + +0.1 589,413 + -1.4 589,413 + +0.2 589,414 - +0.7 589,414 - -1.9 589,414 - -0.2 589,414 - +1.4 589,414 - -0.8 589,440 + +0.7 589,441 - +0.6 589,568 + -1.4 589,568 + +0.3 589,568 + -0.4 589,568 + -0.5 589,568 + -2.6 589,569 - +1.2 589,569 - +0.2 589,569 - -0.7 589,569 - -0.4
Or see this region's nucleotide sequence