Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2475 and GFF2476 are separated by 130 nucleotides GFF2476 and GFF2477 are separated by 37 nucleotides
GFF2475 - no description, at 533,788 to 535,158
GFF2475
GFF2476 - Tripartite tricarboxylate transporter TctB family, at 535,289 to 535,777
GFF2476
GFF2477 - Tripartite tricarboxylate transporter TctA family, at 535,815 to 537,326
GFF2477
Position (kb) 535
536 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 534.887 kb on - strand, within GFF2475 at 535.210 kb on + strand at 535.210 kb on + strand at 535.210 kb on + strand at 535.210 kb on + strand at 535.374 kb on - strand, within GFF2476 at 535.374 kb on - strand, within GFF2476 at 535.374 kb on - strand, within GFF2476 at 535.374 kb on - strand, within GFF2476 at 535.409 kb on + strand, within GFF2476 at 535.410 kb on - strand, within GFF2476 at 535.622 kb on + strand, within GFF2476 at 535.623 kb on - strand, within GFF2476 at 535.712 kb on + strand, within GFF2476 at 535.712 kb on + strand, within GFF2476 at 535.713 kb on - strand, within GFF2476 at 535.764 kb on + strand at 535.826 kb on + strand at 535.827 kb on - strand at 536.106 kb on + strand, within GFF2477 at 536.235 kb on - strand, within GFF2477 at 536.235 kb on - strand, within GFF2477 at 536.652 kb on + strand, within GFF2477 at 536.652 kb on + strand, within GFF2477 at 536.652 kb on + strand, within GFF2477 at 536.653 kb on - strand, within GFF2477
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 534,887 - GFF2475 0.80 -1.0 535,210 + -1.4 535,210 + -1.0 535,210 + -0.3 535,210 + +0.7 535,374 - GFF2476 0.17 +0.1 535,374 - GFF2476 0.17 -1.3 535,374 - GFF2476 0.17 -2.1 535,374 - GFF2476 0.17 -1.0 535,409 + GFF2476 0.25 +0.4 535,410 - GFF2476 0.25 -0.1 535,622 + GFF2476 0.68 +0.4 535,623 - GFF2476 0.68 -0.7 535,712 + GFF2476 0.87 -0.4 535,712 + GFF2476 0.87 +0.4 535,713 - GFF2476 0.87 +0.1 535,764 + +0.0 535,826 + -2.7 535,827 - -0.2 536,106 + GFF2477 0.19 -3.4 536,235 - GFF2477 0.28 -1.4 536,235 - GFF2477 0.28 +1.9 536,652 + GFF2477 0.55 -1.0 536,652 + GFF2477 0.55 -3.0 536,652 + GFF2477 0.55 -0.7 536,653 - GFF2477 0.55 -0.6
Or see this region's nucleotide sequence