Strain Fitness in Variovorax sp. SCN45 around GFF2463

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2462 and GFF2463 are separated by 21 nucleotidesGFF2463 and GFF2464 overlap by 4 nucleotides GFF2462 - Mg(2+) transport ATPase, P-type (EC 3.6.3.2), at 520,488 to 523,253 GFF2462 GFF2463 - Response regulator BaeR, at 523,275 to 523,973 GFF2463 GFF2464 - Sensory histidine kinase BaeS, at 523,970 to 525,730 GFF2464 Position (kb) 523 524Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 522.434 kb on - strand, within GFF2462at 522.648 kb on + strand, within GFF2462at 522.648 kb on + strand, within GFF2462at 522.649 kb on - strand, within GFF2462at 522.649 kb on - strand, within GFF2462at 522.766 kb on - strand, within GFF2462at 523.162 kb on - strandat 523.195 kb on - strandat 523.227 kb on + strandat 523.681 kb on + strand, within GFF2463at 523.682 kb on - strand, within GFF2463at 523.915 kb on + strandat 523.916 kb on - strandat 524.272 kb on - strand, within GFF2464

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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522,434 - GFF2462 0.70 +0.0
522,648 + GFF2462 0.78 -1.8
522,648 + GFF2462 0.78 -0.6
522,649 - GFF2462 0.78 +1.0
522,649 - GFF2462 0.78 -3.4
522,766 - GFF2462 0.82 +3.5
523,162 - -0.8
523,195 - +0.1
523,227 + +0.4
523,681 + GFF2463 0.58 +0.0
523,682 - GFF2463 0.58 -2.3
523,915 + +0.4
523,916 - -2.9
524,272 - GFF2464 0.17 -1.4

Or see this region's nucleotide sequence