Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF242 and GFF243 overlap by 4 nucleotides GFF243 and GFF244 are separated by 63 nucleotides
GFF242 - Lipopolysaccharide export system permease protein LptG, at 270,299 to 271,411
GFF242
GFF243 - Sirohydrochlorin cobaltochelatase CbiX(small) (EC 4.99.1.3), at 271,408 to 271,794
GFF243
GFF244 - Cys regulon transcriptional activator CysB, at 271,858 to 272,799
GFF244
Position (kb) 271
272 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 271.515 kb on - strand, within GFF243 at 271.552 kb on + strand, within GFF243 at 271.552 kb on + strand, within GFF243 at 271.552 kb on + strand, within GFF243 at 271.552 kb on + strand, within GFF243 at 271.552 kb on + strand, within GFF243 at 271.552 kb on + strand, within GFF243 at 271.553 kb on - strand, within GFF243 at 271.553 kb on - strand, within GFF243 at 271.553 kb on - strand, within GFF243 at 271.553 kb on - strand, within GFF243 at 271.842 kb on + strand at 271.938 kb on + strand at 271.938 kb on + strand at 271.938 kb on + strand at 271.938 kb on + strand at 271.938 kb on + strand at 271.939 kb on - strand at 271.939 kb on - strand at 271.939 kb on - strand at 271.939 kb on - strand at 271.939 kb on - strand at 271.939 kb on - strand at 271.939 kb on - strand at 272.173 kb on + strand, within GFF244 at 272.173 kb on + strand, within GFF244 at 272.174 kb on - strand, within GFF244 at 272.347 kb on + strand, within GFF244 at 272.348 kb on - strand, within GFF244 at 272.348 kb on - strand, within GFF244 at 272.446 kb on + strand, within GFF244 at 272.446 kb on + strand, within GFF244 at 272.447 kb on - strand, within GFF244 at 272.447 kb on - strand, within GFF244 at 272.447 kb on - strand, within GFF244 at 272.554 kb on + strand, within GFF244 at 272.554 kb on + strand, within GFF244 at 272.554 kb on + strand, within GFF244 at 272.554 kb on + strand, within GFF244 at 272.554 kb on + strand, within GFF244 at 272.555 kb on - strand, within GFF244 at 272.555 kb on - strand, within GFF244 at 272.555 kb on - strand, within GFF244 at 272.662 kb on - strand, within GFF244 at 272.692 kb on + strand, within GFF244 at 272.693 kb on - strand, within GFF244 at 272.788 kb on + strand at 272.788 kb on + strand at 272.788 kb on + strand at 272.789 kb on - strand at 272.789 kb on - strand at 272.789 kb on - strand at 272.789 kb on - strand at 272.789 kb on - strand at 272.789 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 271,515 - GFF243 0.28 +0.6 271,552 + GFF243 0.37 -1.0 271,552 + GFF243 0.37 -3.5 271,552 + GFF243 0.37 -1.0 271,552 + GFF243 0.37 -1.5 271,552 + GFF243 0.37 -1.8 271,552 + GFF243 0.37 -1.2 271,553 - GFF243 0.37 -2.1 271,553 - GFF243 0.37 -4.2 271,553 - GFF243 0.37 -2.5 271,553 - GFF243 0.37 -3.1 271,842 + +1.8 271,938 + -3.3 271,938 + -0.4 271,938 + +0.2 271,938 + -0.4 271,938 + -1.2 271,939 - -1.2 271,939 - -2.2 271,939 - -1.9 271,939 - -3.1 271,939 - -1.6 271,939 - -1.6 271,939 - -0.4 272,173 + GFF244 0.33 -1.9 272,173 + GFF244 0.33 -0.8 272,174 - GFF244 0.34 -1.0 272,347 + GFF244 0.52 -1.2 272,348 - GFF244 0.52 -1.0 272,348 - GFF244 0.52 -1.6 272,446 + GFF244 0.62 -2.1 272,446 + GFF244 0.62 -2.3 272,447 - GFF244 0.63 -3.8 272,447 - GFF244 0.63 -2.0 272,447 - GFF244 0.63 -2.0 272,554 + GFF244 0.74 -0.0 272,554 + GFF244 0.74 -1.2 272,554 + GFF244 0.74 -2.4 272,554 + GFF244 0.74 -0.8 272,554 + GFF244 0.74 -0.8 272,555 - GFF244 0.74 -0.4 272,555 - GFF244 0.74 -1.4 272,555 - GFF244 0.74 -1.4 272,662 - GFF244 0.85 -0.4 272,692 + GFF244 0.89 -1.2 272,693 - GFF244 0.89 -1.0 272,788 + -0.8 272,788 + -3.1 272,788 + +0.8 272,789 - +0.3 272,789 - -0.5 272,789 - +0.3 272,789 - +0.6 272,789 - +1.3 272,789 - -0.3
Or see this region's nucleotide sequence