Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2368 and GFF2369 are separated by 23 nucleotides GFF2369 and GFF2370 are separated by 3 nucleotides
GFF2368 - ABC transporter, substrate-binding protein (cluster 7, di-/tri-carboxylate), at 422,349 to 423,314
GFF2368
GFF2369 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 423,338 to 424,213
GFF2369
GFF2370 - L-carnitine dehydratase/bile acid-inducible protein F, at 424,217 to 425,422
GFF2370
Position (kb) 423
424
425 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 422.397 kb on + strand at 422.397 kb on + strand at 422.397 kb on + strand at 422.398 kb on - strand at 422.518 kb on - strand, within GFF2368 at 422.686 kb on + strand, within GFF2368 at 422.686 kb on + strand, within GFF2368 at 422.770 kb on + strand, within GFF2368 at 422.771 kb on - strand, within GFF2368 at 422.771 kb on - strand, within GFF2368 at 422.915 kb on - strand, within GFF2368 at 423.043 kb on + strand, within GFF2368 at 423.055 kb on + strand, within GFF2368 at 423.056 kb on - strand, within GFF2368 at 423.205 kb on + strand, within GFF2368 at 423.546 kb on + strand, within GFF2369 at 423.546 kb on + strand, within GFF2369 at 423.579 kb on + strand, within GFF2369 at 423.844 kb on - strand, within GFF2369 at 424.033 kb on + strand, within GFF2369 at 424.054 kb on - strand, within GFF2369 at 424.120 kb on - strand, within GFF2369 at 424.120 kb on - strand, within GFF2369 at 424.638 kb on + strand, within GFF2370 at 424.638 kb on + strand, within GFF2370 at 424.638 kb on + strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.639 kb on - strand, within GFF2370 at 424.783 kb on - strand, within GFF2370 at 424.783 kb on - strand, within GFF2370 at 424.783 kb on - strand, within GFF2370 at 424.812 kb on + strand, within GFF2370 at 424.854 kb on + strand, within GFF2370 at 424.876 kb on - strand, within GFF2370 at 424.987 kb on - strand, within GFF2370 at 424.987 kb on - strand, within GFF2370 at 425.005 kb on - strand, within GFF2370 at 425.005 kb on - strand, within GFF2370 at 425.005 kb on - strand, within GFF2370 at 425.005 kb on - strand, within GFF2370
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 422,397 + +0.5 422,397 + +1.2 422,397 + -0.1 422,398 - -2.3 422,518 - GFF2368 0.17 +0.2 422,686 + GFF2368 0.35 +0.8 422,686 + GFF2368 0.35 -0.1 422,770 + GFF2368 0.44 -1.6 422,771 - GFF2368 0.44 +0.5 422,771 - GFF2368 0.44 -0.4 422,915 - GFF2368 0.59 -3.0 423,043 + GFF2368 0.72 +0.3 423,055 + GFF2368 0.73 -2.8 423,056 - GFF2368 0.73 +2.0 423,205 + GFF2368 0.89 -0.1 423,546 + GFF2369 0.24 +0.7 423,546 + GFF2369 0.24 +0.3 423,579 + GFF2369 0.28 +0.5 423,844 - GFF2369 0.58 +0.1 424,033 + GFF2369 0.79 +2.1 424,054 - GFF2369 0.82 +0.5 424,120 - GFF2369 0.89 +0.7 424,120 - GFF2369 0.89 -1.6 424,638 + GFF2370 0.35 -0.7 424,638 + GFF2370 0.35 -1.7 424,638 + GFF2370 0.35 -0.1 424,639 - GFF2370 0.35 -1.6 424,639 - GFF2370 0.35 -1.7 424,639 - GFF2370 0.35 -0.9 424,639 - GFF2370 0.35 -1.0 424,639 - GFF2370 0.35 -0.7 424,639 - GFF2370 0.35 -1.8 424,639 - GFF2370 0.35 -1.2 424,639 - GFF2370 0.35 -1.2 424,783 - GFF2370 0.47 -2.4 424,783 - GFF2370 0.47 -0.9 424,783 - GFF2370 0.47 -0.1 424,812 + GFF2370 0.49 +0.5 424,854 + GFF2370 0.53 -3.1 424,876 - GFF2370 0.55 -1.8 424,987 - GFF2370 0.64 -0.3 424,987 - GFF2370 0.64 +0.3 425,005 - GFF2370 0.65 -4.0 425,005 - GFF2370 0.65 -1.4 425,005 - GFF2370 0.65 -0.8 425,005 - GFF2370 0.65 -0.9
Or see this region's nucleotide sequence