Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2340 and GFF2341 are separated by 120 nucleotides GFF2341 and GFF2342 overlap by 4 nucleotides GFF2342 and GFF2343 are separated by 5 nucleotides
GFF2340 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 391,246 to 392,739
GFF2340
GFF2341 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 392,860 to 393,690
GFF2341
GFF2342 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 393,687 to 394,676
GFF2342
GFF2343 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 394,682 to 395,557
GFF2343
Position (kb) 392
393
394 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 392.465 kb on + strand, within GFF2340 at 392.466 kb on - strand, within GFF2340 at 392.466 kb on - strand, within GFF2340 at 392.466 kb on - strand, within GFF2340 at 392.466 kb on - strand, within GFF2340 at 392.561 kb on + strand, within GFF2340 at 392.561 kb on + strand, within GFF2340 at 392.561 kb on + strand, within GFF2340 at 392.561 kb on + strand, within GFF2340 at 392.562 kb on - strand, within GFF2340 at 392.562 kb on - strand, within GFF2340 at 392.810 kb on - strand at 392.825 kb on + strand at 392.924 kb on + strand at 393.369 kb on - strand, within GFF2341 at 393.632 kb on + strand at 393.632 kb on + strand at 393.802 kb on + strand, within GFF2342 at 393.802 kb on + strand, within GFF2342 at 393.803 kb on - strand, within GFF2342 at 393.803 kb on - strand, within GFF2342 at 393.803 kb on - strand, within GFF2342 at 393.803 kb on - strand, within GFF2342 at 393.803 kb on - strand, within GFF2342 at 393.934 kb on + strand, within GFF2342 at 393.935 kb on - strand, within GFF2342 at 393.997 kb on + strand, within GFF2342 at 393.998 kb on - strand, within GFF2342 at 394.609 kb on - strand at 394.683 kb on + strand at 394.683 kb on + strand at 394.684 kb on - strand at 394.684 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 392,465 + GFF2340 0.82 +2.1 392,466 - GFF2340 0.82 +3.6 392,466 - GFF2340 0.82 +0.4 392,466 - GFF2340 0.82 -0.5 392,466 - GFF2340 0.82 -1.1 392,561 + GFF2340 0.88 -0.9 392,561 + GFF2340 0.88 -0.3 392,561 + GFF2340 0.88 +0.1 392,561 + GFF2340 0.88 +0.8 392,562 - GFF2340 0.88 -1.3 392,562 - GFF2340 0.88 -1.5 392,810 - -1.8 392,825 + +0.0 392,924 + -0.5 393,369 - GFF2341 0.61 -3.6 393,632 + -1.1 393,632 + -2.1 393,802 + GFF2342 0.12 +0.2 393,802 + GFF2342 0.12 +1.1 393,803 - GFF2342 0.12 -1.8 393,803 - GFF2342 0.12 -0.3 393,803 - GFF2342 0.12 -1.6 393,803 - GFF2342 0.12 -0.3 393,803 - GFF2342 0.12 +0.3 393,934 + GFF2342 0.25 -2.6 393,935 - GFF2342 0.25 +1.4 393,997 + GFF2342 0.31 +1.6 393,998 - GFF2342 0.31 +0.9 394,609 - -0.1 394,683 + -1.3 394,683 + +0.2 394,684 - -2.3 394,684 - +0.8
Or see this region's nucleotide sequence