Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2167 and GFF2168 are separated by 31 nucleotides GFF2168 and GFF2169 overlap by 4 nucleotides
GFF2167 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 220,681 to 221,880
GFF2167
GFF2168 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 221,912 to 222,835
GFF2168
GFF2169 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 222,832 to 224,622
GFF2169
Position (kb) 221
222
223 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 221.110 kb on + strand, within GFF2167 at 221.110 kb on + strand, within GFF2167 at 221.110 kb on + strand, within GFF2167 at 221.110 kb on + strand, within GFF2167 at 221.110 kb on + strand, within GFF2167 at 221.110 kb on + strand, within GFF2167 at 221.111 kb on - strand, within GFF2167 at 221.111 kb on - strand, within GFF2167 at 221.111 kb on - strand, within GFF2167 at 221.164 kb on + strand, within GFF2167 at 221.428 kb on + strand, within GFF2167 at 221.429 kb on - strand, within GFF2167 at 221.429 kb on - strand, within GFF2167 at 221.429 kb on - strand, within GFF2167 at 221.429 kb on - strand, within GFF2167 at 221.476 kb on + strand, within GFF2167 at 221.476 kb on + strand, within GFF2167 at 221.623 kb on + strand, within GFF2167 at 221.624 kb on - strand, within GFF2167 at 221.624 kb on - strand, within GFF2167 at 221.624 kb on - strand, within GFF2167 at 221.740 kb on + strand, within GFF2167 at 221.740 kb on + strand, within GFF2167 at 221.741 kb on - strand, within GFF2167 at 221.830 kb on + strand at 221.831 kb on - strand at 221.879 kb on - strand at 221.879 kb on - strand at 221.919 kb on + strand at 221.919 kb on + strand at 221.919 kb on + strand at 221.919 kb on + strand at 221.919 kb on + strand at 221.966 kb on + strand at 221.967 kb on - strand at 222.200 kb on + strand, within GFF2168 at 222.201 kb on - strand, within GFF2168 at 222.201 kb on - strand, within GFF2168 at 222.201 kb on - strand, within GFF2168 at 222.831 kb on + strand at 222.831 kb on + strand at 222.831 kb on + strand at 222.831 kb on + strand at 222.832 kb on - strand at 222.832 kb on - strand at 222.832 kb on - strand at 222.832 kb on - strand at 222.913 kb on + strand at 222.913 kb on + strand at 222.914 kb on - strand at 222.914 kb on - strand at 222.916 kb on + strand at 222.916 kb on + strand at 222.916 kb on + strand at 222.917 kb on - strand at 222.917 kb on - strand at 222.950 kb on - strand at 222.950 kb on - strand at 222.950 kb on - strand at 223.162 kb on + strand, within GFF2169 at 223.162 kb on + strand, within GFF2169 at 223.162 kb on + strand, within GFF2169 at 223.163 kb on - strand, within GFF2169 at 223.163 kb on - strand, within GFF2169 at 223.163 kb on - strand, within GFF2169 at 223.252 kb on + strand, within GFF2169 at 223.252 kb on + strand, within GFF2169 at 223.252 kb on + strand, within GFF2169 at 223.252 kb on + strand, within GFF2169 at 223.252 kb on + strand, within GFF2169 at 223.439 kb on - strand, within GFF2169 at 223.519 kb on + strand, within GFF2169 at 223.520 kb on - strand, within GFF2169 at 223.520 kb on - strand, within GFF2169 at 223.600 kb on + strand, within GFF2169 at 223.601 kb on - strand, within GFF2169 at 223.601 kb on - strand, within GFF2169 at 223.601 kb on - strand, within GFF2169 at 223.601 kb on - strand, within GFF2169 at 223.708 kb on + strand, within GFF2169 at 223.708 kb on + strand, within GFF2169 at 223.709 kb on - strand, within GFF2169 at 223.709 kb on - strand, within GFF2169 at 223.709 kb on - strand, within GFF2169
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 221,110 + GFF2167 0.36 +0.9 221,110 + GFF2167 0.36 -0.1 221,110 + GFF2167 0.36 -2.5 221,110 + GFF2167 0.36 -0.5 221,110 + GFF2167 0.36 +0.1 221,110 + GFF2167 0.36 +0.5 221,111 - GFF2167 0.36 -0.9 221,111 - GFF2167 0.36 -1.4 221,111 - GFF2167 0.36 -1.4 221,164 + GFF2167 0.40 -1.1 221,428 + GFF2167 0.62 -0.3 221,429 - GFF2167 0.62 -1.3 221,429 - GFF2167 0.62 -1.0 221,429 - GFF2167 0.62 -1.9 221,429 - GFF2167 0.62 -0.5 221,476 + GFF2167 0.66 -1.2 221,476 + GFF2167 0.66 -0.8 221,623 + GFF2167 0.79 -1.4 221,624 - GFF2167 0.79 +1.6 221,624 - GFF2167 0.79 -2.5 221,624 - GFF2167 0.79 -0.5 221,740 + GFF2167 0.88 -0.2 221,740 + GFF2167 0.88 +1.5 221,741 - GFF2167 0.88 -1.3 221,830 + +0.7 221,831 - +0.5 221,879 - -0.3 221,879 - +2.1 221,919 + -2.1 221,919 + -0.7 221,919 + +0.9 221,919 + -2.5 221,919 + +1.1 221,966 + +0.2 221,967 - -0.1 222,200 + GFF2168 0.31 -2.6 222,201 - GFF2168 0.31 -1.4 222,201 - GFF2168 0.31 +0.0 222,201 - GFF2168 0.31 -0.7 222,831 + +1.3 222,831 + -1.4 222,831 + -0.3 222,831 + -0.1 222,832 - -0.8 222,832 - +2.6 222,832 - -0.9 222,832 - +0.1 222,913 + -0.3 222,913 + -2.0 222,914 - +2.4 222,914 - +0.6 222,916 + -0.2 222,916 + +0.9 222,916 + -1.2 222,917 - -2.6 222,917 - -0.5 222,950 - +0.7 222,950 - -2.3 222,950 - -0.6 223,162 + GFF2169 0.18 +2.1 223,162 + GFF2169 0.18 +0.9 223,162 + GFF2169 0.18 -0.4 223,163 - GFF2169 0.18 -1.1 223,163 - GFF2169 0.18 +0.7 223,163 - GFF2169 0.18 +1.1 223,252 + GFF2169 0.23 -0.3 223,252 + GFF2169 0.23 -0.3 223,252 + GFF2169 0.23 +2.0 223,252 + GFF2169 0.23 +1.9 223,252 + GFF2169 0.23 -0.8 223,439 - GFF2169 0.34 -1.6 223,519 + GFF2169 0.38 -0.5 223,520 - GFF2169 0.38 -1.7 223,520 - GFF2169 0.38 +1.0 223,600 + GFF2169 0.43 -0.2 223,601 - GFF2169 0.43 -1.4 223,601 - GFF2169 0.43 +2.8 223,601 - GFF2169 0.43 -1.3 223,601 - GFF2169 0.43 +1.5 223,708 + GFF2169 0.49 +1.7 223,708 + GFF2169 0.49 -0.6 223,709 - GFF2169 0.49 -0.5 223,709 - GFF2169 0.49 +1.4 223,709 - GFF2169 0.49 -0.1
Or see this region's nucleotide sequence