Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1899 and GFF1900 are separated by 235 nucleotides GFF1900 and GFF1901 are separated by 158 nucleotides GFF1901 and GFF1902 are separated by 29 nucleotides
GFF1899 - Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits, at 574,114 to 577,656
GFF1899
GFF1900 - Transcriptional regulator, LysR family, at 577,892 to 578,809
GFF1900
GFF1901 - no description, at 578,968 to 579,612
GFF1901
GFF1902 - hypothetical protein, at 579,642 to 581,852
GFF1902
Position (kb) 577
578
579 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 577.112 kb on + strand, within GFF1899 at 577.112 kb on + strand, within GFF1899 at 577.113 kb on - strand, within GFF1899 at 577.113 kb on - strand, within GFF1899 at 577.113 kb on - strand, within GFF1899 at 577.113 kb on - strand, within GFF1899 at 577.113 kb on - strand, within GFF1899 at 577.113 kb on - strand, within GFF1899 at 577.113 kb on - strand, within GFF1899 at 577.310 kb on + strand at 577.310 kb on + strand at 577.310 kb on + strand at 577.477 kb on + strand at 577.589 kb on + strand at 577.589 kb on + strand at 577.590 kb on - strand at 577.613 kb on + strand at 577.613 kb on + strand at 577.613 kb on + strand at 577.613 kb on + strand at 577.613 kb on + strand at 577.614 kb on - strand at 577.614 kb on - strand at 577.614 kb on - strand at 577.614 kb on - strand at 577.614 kb on - strand at 577.614 kb on - strand at 578.181 kb on - strand, within GFF1900 at 578.318 kb on + strand, within GFF1900 at 578.318 kb on + strand, within GFF1900 at 578.318 kb on + strand, within GFF1900 at 578.319 kb on - strand, within GFF1900 at 578.319 kb on - strand, within GFF1900 at 578.319 kb on - strand, within GFF1900 at 578.319 kb on - strand, within GFF1900 at 578.319 kb on - strand, within GFF1900 at 578.319 kb on - strand, within GFF1900 at 578.666 kb on + strand, within GFF1900 at 578.667 kb on - strand, within GFF1900 at 578.667 kb on - strand, within GFF1900 at 578.729 kb on + strand at 578.729 kb on + strand at 578.729 kb on + strand at 578.729 kb on + strand at 578.729 kb on + strand at 578.729 kb on + strand at 578.729 kb on + strand at 578.729 kb on + strand at 578.729 kb on + strand at 578.729 kb on + strand at 578.729 kb on + strand at 578.729 kb on + strand at 578.729 kb on + strand at 578.729 kb on + strand at 578.730 kb on - strand at 578.730 kb on - strand at 578.730 kb on - strand at 578.730 kb on - strand at 578.730 kb on - strand at 578.730 kb on - strand at 578.730 kb on - strand at 578.737 kb on + strand at 578.737 kb on + strand at 578.737 kb on + strand at 578.737 kb on + strand at 578.853 kb on + strand at 578.893 kb on - strand at 578.893 kb on - strand at 578.948 kb on + strand at 578.963 kb on + strand at 578.963 kb on + strand at 578.964 kb on - strand at 578.964 kb on - strand at 578.964 kb on - strand at 578.964 kb on - strand at 578.965 kb on + strand at 578.965 kb on + strand at 578.965 kb on + strand at 578.965 kb on + strand at 578.965 kb on + strand at 578.965 kb on + strand at 578.966 kb on - strand at 578.966 kb on - strand at 578.966 kb on - strand at 578.966 kb on - strand at 578.966 kb on - strand at 578.966 kb on - strand at 579.288 kb on + strand, within GFF1901 at 579.442 kb on + strand, within GFF1901 at 579.442 kb on + strand, within GFF1901 at 579.442 kb on + strand, within GFF1901 at 579.442 kb on + strand, within GFF1901 at 579.442 kb on + strand, within GFF1901 at 579.442 kb on + strand, within GFF1901 at 579.443 kb on - strand, within GFF1901 at 579.443 kb on - strand, within GFF1901 at 579.443 kb on - strand, within GFF1901 at 579.443 kb on - strand, within GFF1901 at 579.443 kb on - strand, within GFF1901 at 579.670 kb on - strand at 579.721 kb on - strand at 579.721 kb on - strand at 579.735 kb on + strand at 579.736 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 577,112 + GFF1899 0.85 -2.4 577,112 + GFF1899 0.85 -1.9 577,113 - GFF1899 0.85 -0.2 577,113 - GFF1899 0.85 -1.8 577,113 - GFF1899 0.85 -0.6 577,113 - GFF1899 0.85 -0.8 577,113 - GFF1899 0.85 -1.2 577,113 - GFF1899 0.85 -3.3 577,113 - GFF1899 0.85 -0.4 577,310 + -2.6 577,310 + -2.2 577,310 + -3.2 577,477 + -1.6 577,589 + -2.7 577,589 + -2.7 577,590 - -2.7 577,613 + -0.8 577,613 + -4.3 577,613 + -0.4 577,613 + -2.2 577,613 + -3.6 577,614 - -3.5 577,614 - -3.5 577,614 - +1.4 577,614 - -3.6 577,614 - -2.8 577,614 - -0.8 578,181 - GFF1900 0.31 -2.9 578,318 + GFF1900 0.46 -0.7 578,318 + GFF1900 0.46 -0.6 578,318 + GFF1900 0.46 -1.6 578,319 - GFF1900 0.47 +0.6 578,319 - GFF1900 0.47 -1.6 578,319 - GFF1900 0.47 -2.6 578,319 - GFF1900 0.47 +2.2 578,319 - GFF1900 0.47 -1.7 578,319 - GFF1900 0.47 -3.2 578,666 + GFF1900 0.84 -4.5 578,667 - GFF1900 0.84 -3.2 578,667 - GFF1900 0.84 -0.0 578,729 + -0.2 578,729 + +1.6 578,729 + -1.9 578,729 + -3.5 578,729 + -3.5 578,729 + -2.8 578,729 + -1.8 578,729 + -4.2 578,729 + -2.4 578,729 + -1.1 578,729 + -2.6 578,729 + -3.4 578,729 + -1.6 578,729 + -0.2 578,730 - -1.6 578,730 - -2.1 578,730 - -2.0 578,730 - -0.6 578,730 - -0.4 578,730 - -4.0 578,730 - -3.4 578,737 + -1.3 578,737 + -0.6 578,737 + +0.6 578,737 + -1.6 578,853 + +1.3 578,893 - +0.7 578,893 - -0.6 578,948 + -1.0 578,963 + -0.6 578,963 + -0.6 578,964 - -0.3 578,964 - +0.4 578,964 - +0.3 578,964 - -0.8 578,965 + +0.6 578,965 + +2.6 578,965 + +4.3 578,965 + +0.4 578,965 + +0.3 578,965 + +1.0 578,966 - +1.0 578,966 - -1.2 578,966 - +1.7 578,966 - -0.5 578,966 - -0.0 578,966 - -1.2 579,288 + GFF1901 0.50 -0.7 579,442 + GFF1901 0.73 -0.2 579,442 + GFF1901 0.73 -0.0 579,442 + GFF1901 0.73 +0.2 579,442 + GFF1901 0.73 -1.8 579,442 + GFF1901 0.73 +0.6 579,442 + GFF1901 0.73 -0.8 579,443 - GFF1901 0.74 -0.5 579,443 - GFF1901 0.74 -2.6 579,443 - GFF1901 0.74 -0.6 579,443 - GFF1901 0.74 -1.6 579,443 - GFF1901 0.74 -0.1 579,670 - +1.8 579,721 - +0.7 579,721 - -2.0 579,735 + +0.6 579,736 - -0.1
Or see this region's nucleotide sequence