Strain Fitness in Variovorax sp. SCN45 around GFF189

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF187 and GFF188 are separated by 37 nucleotidesGFF188 and GFF189 are separated by 1 nucleotidesGFF189 and GFF190 are separated by 43 nucleotidesGFF190 and GFF191 overlap by 1 nucleotides GFF187 - tRNA-specific adenosine-34 deaminase (EC 3.5.4.33) / Domain of unknown function, at 218,082 to 219,155 GFF187 GFF188 - no description, at 219,193 to 219,420 GFF188 GFF189 - Negative transcriptional regulator, at 219,422 to 220,066 GFF189 GFF190 - Ankyrin, at 220,110 to 220,808 GFF190 GFF191 - (Y14336) putative extracellular protein containing predicted 35aa signal peptide, at 220,808 to 221,308 GFF191 Position (kb) 219 220 221Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 218.648 kb on - strand, within GFF187at 219.514 kb on - strand, within GFF189at 219.663 kb on + strand, within GFF189at 219.663 kb on + strand, within GFF189at 219.664 kb on - strand, within GFF189at 219.762 kb on + strand, within GFF189at 219.763 kb on - strand, within GFF189at 219.763 kb on - strand, within GFF189at 219.763 kb on - strand, within GFF189at 219.763 kb on - strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.813 kb on + strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.814 kb on - strand, within GFF189at 219.864 kb on + strand, within GFF189at 219.865 kb on - strand, within GFF189at 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.062 kb on + strandat 220.063 kb on - strandat 220.063 kb on - strandat 220.063 kb on - strandat 220.063 kb on - strandat 220.063 kb on - strandat 220.063 kb on - strandat 220.063 kb on - strandat 220.063 kb on - strandat 220.063 kb on - strandat 220.063 kb on - strandat 220.063 kb on - strandat 220.111 kb on + strandat 220.112 kb on - strandat 220.112 kb on - strandat 220.438 kb on - strand, within GFF190at 220.501 kb on + strand, within GFF190at 220.502 kb on - strand, within GFF190at 220.699 kb on + strand, within GFF190at 220.699 kb on + strand, within GFF190at 220.699 kb on + strand, within GFF190at 220.700 kb on - strand, within GFF190at 220.700 kb on - strand, within GFF190at 220.700 kb on - strand, within GFF190at 220.700 kb on - strand, within GFF190at 220.700 kb on - strand, within GFF190at 220.700 kb on - strand, within GFF190at 220.959 kb on + strand, within GFF191at 220.959 kb on + strand, within GFF191at 220.959 kb on + strand, within GFF191at 220.959 kb on + strand, within GFF191at 220.959 kb on + strand, within GFF191at 220.959 kb on + strand, within GFF191at 220.959 kb on + strand, within GFF191at 220.959 kb on + strand, within GFF191at 220.959 kb on + strand, within GFF191at 220.959 kb on + strand, within GFF191at 220.960 kb on - strand, within GFF191at 220.960 kb on - strand, within GFF191at 220.960 kb on - strand, within GFF191

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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218,648 - GFF187 0.53 -0.8
219,514 - GFF189 0.14 +0.3
219,663 + GFF189 0.37 -0.1
219,663 + GFF189 0.37 +1.0
219,664 - GFF189 0.38 +0.1
219,762 + GFF189 0.53 -0.5
219,763 - GFF189 0.53 +0.7
219,763 - GFF189 0.53 -0.4
219,763 - GFF189 0.53 -0.3
219,763 - GFF189 0.53 +0.3
219,813 + GFF189 0.61 +1.6
219,813 + GFF189 0.61 +0.8
219,813 + GFF189 0.61 +0.6
219,813 + GFF189 0.61 -1.5
219,813 + GFF189 0.61 -1.9
219,813 + GFF189 0.61 +1.5
219,813 + GFF189 0.61 +0.3
219,813 + GFF189 0.61 +2.5
219,813 + GFF189 0.61 -1.3
219,813 + GFF189 0.61 -0.5
219,813 + GFF189 0.61 +0.4
219,813 + GFF189 0.61 -0.8
219,813 + GFF189 0.61 -0.1
219,813 + GFF189 0.61 -2.3
219,813 + GFF189 0.61 +0.7
219,813 + GFF189 0.61 -1.1
219,813 + GFF189 0.61 -0.3
219,813 + GFF189 0.61 -1.1
219,813 + GFF189 0.61 -0.7
219,813 + GFF189 0.61 -1.5
219,814 - GFF189 0.61 +1.5
219,814 - GFF189 0.61 -0.1
219,814 - GFF189 0.61 +1.7
219,814 - GFF189 0.61 -1.1
219,814 - GFF189 0.61 -0.3
219,814 - GFF189 0.61 -0.2
219,814 - GFF189 0.61 -0.5
219,814 - GFF189 0.61 +0.1
219,814 - GFF189 0.61 +0.9
219,814 - GFF189 0.61 -0.8
219,814 - GFF189 0.61 +0.1
219,814 - GFF189 0.61 +0.2
219,814 - GFF189 0.61 +0.7
219,814 - GFF189 0.61 +2.2
219,814 - GFF189 0.61 -1.3
219,814 - GFF189 0.61 -1.1
219,814 - GFF189 0.61 -2.2
219,814 - GFF189 0.61 -1.2
219,814 - GFF189 0.61 -1.9
219,814 - GFF189 0.61 +0.0
219,814 - GFF189 0.61 +1.0
219,864 + GFF189 0.69 +0.8
219,865 - GFF189 0.69 -1.5
220,062 + -1.9
220,062 + -1.5
220,062 + +1.5
220,062 + -0.8
220,062 + +0.5
220,062 + -2.7
220,062 + -0.5
220,062 + -0.1
220,062 + -3.6
220,062 + -1.1
220,062 + +0.2
220,062 + -0.1
220,062 + -0.6
220,062 + -0.1
220,062 + +0.2
220,062 + +4.3
220,062 + -2.2
220,062 + -1.4
220,062 + +0.6
220,062 + -3.7
220,062 + -3.6
220,062 + -0.1
220,062 + -0.1
220,062 + +0.1
220,062 + +1.0
220,063 - -0.6
220,063 - -1.1
220,063 - +1.1
220,063 - -0.5
220,063 - +0.4
220,063 - +0.8
220,063 - +1.3
220,063 - -1.3
220,063 - +0.7
220,063 - -1.1
220,063 - -0.8
220,111 + -2.7
220,112 - -2.3
220,112 - -1.1
220,438 - GFF190 0.47 +0.9
220,501 + GFF190 0.56 -1.6
220,502 - GFF190 0.56 +0.5
220,699 + GFF190 0.84 -0.2
220,699 + GFF190 0.84 +0.4
220,699 + GFF190 0.84 -1.3
220,700 - GFF190 0.84 -2.1
220,700 - GFF190 0.84 -1.2
220,700 - GFF190 0.84 +0.6
220,700 - GFF190 0.84 -0.1
220,700 - GFF190 0.84 -1.2
220,700 - GFF190 0.84 -0.6
220,959 + GFF191 0.30 -1.1
220,959 + GFF191 0.30 +1.9
220,959 + GFF191 0.30 -0.5
220,959 + GFF191 0.30 +1.4
220,959 + GFF191 0.30 +1.4
220,959 + GFF191 0.30 -0.1
220,959 + GFF191 0.30 -1.6
220,959 + GFF191 0.30 -2.1
220,959 + GFF191 0.30 +0.2
220,959 + GFF191 0.30 +0.5
220,960 - GFF191 0.30 -0.9
220,960 - GFF191 0.30 +1.3
220,960 - GFF191 0.30 -0.4

Or see this region's nucleotide sequence