Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1887 and GFF1888 are separated by 4 nucleotides GFF1888 and GFF1889 are separated by 30 nucleotides
GFF1887 - Fumarate hydratase class II (EC 4.2.1.2), at 562,656 to 564,038
GFF1887
GFF1888 - BUG/TctC family periplasmic protein, at 564,043 to 565,032
GFF1888
GFF1889 - Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate, at 565,063 to 566,451
GFF1889
Position (kb) 564
565
566 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 563.943 kb on + strand at 563.943 kb on + strand at 563.977 kb on + strand at 564.132 kb on - strand at 564.132 kb on - strand at 564.154 kb on + strand, within GFF1888 at 564.154 kb on + strand, within GFF1888 at 564.154 kb on + strand, within GFF1888 at 564.154 kb on + strand, within GFF1888 at 564.155 kb on - strand, within GFF1888 at 564.209 kb on + strand, within GFF1888 at 564.209 kb on + strand, within GFF1888 at 564.209 kb on + strand, within GFF1888 at 564.260 kb on + strand, within GFF1888 at 564.261 kb on - strand, within GFF1888 at 564.473 kb on + strand, within GFF1888 at 564.473 kb on + strand, within GFF1888 at 564.473 kb on + strand, within GFF1888 at 564.474 kb on - strand, within GFF1888 at 564.699 kb on - strand, within GFF1888 at 564.714 kb on - strand, within GFF1888 at 565.479 kb on - strand, within GFF1889 at 565.757 kb on + strand, within GFF1889 at 565.758 kb on - strand, within GFF1889 at 565.758 kb on - strand, within GFF1889 at 565.758 kb on - strand, within GFF1889 at 565.758 kb on - strand, within GFF1889 at 565.758 kb on - strand, within GFF1889
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 563,943 + -1.9 563,943 + +0.6 563,977 + +0.0 564,132 - -1.3 564,132 - -2.4 564,154 + GFF1888 0.11 -0.1 564,154 + GFF1888 0.11 -0.4 564,154 + GFF1888 0.11 -0.2 564,154 + GFF1888 0.11 -0.4 564,155 - GFF1888 0.11 -3.3 564,209 + GFF1888 0.17 -0.6 564,209 + GFF1888 0.17 -0.8 564,209 + GFF1888 0.17 -0.4 564,260 + GFF1888 0.22 +0.6 564,261 - GFF1888 0.22 +0.2 564,473 + GFF1888 0.43 -1.2 564,473 + GFF1888 0.43 -1.9 564,473 + GFF1888 0.43 -1.2 564,474 - GFF1888 0.44 -2.0 564,699 - GFF1888 0.66 -1.5 564,714 - GFF1888 0.68 -0.6 565,479 - GFF1889 0.30 +2.3 565,757 + GFF1889 0.50 +0.5 565,758 - GFF1889 0.50 -2.1 565,758 - GFF1889 0.50 +0.2 565,758 - GFF1889 0.50 -0.8 565,758 - GFF1889 0.50 -0.1 565,758 - GFF1889 0.50 -0.1
Or see this region's nucleotide sequence