Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1811 and GFF1812 overlap by 4 nucleotides GFF1812 and GFF1813 are separated by 36 nucleotides
GFF1811 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 474,752 to 476,101
GFF1811
GFF1812 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 476,098 to 476,751
GFF1812
GFF1813 - Acetylornithine deacetylase-like protein Acry_1162, at 476,788 to 478,014
GFF1813
Position (kb) 476
477 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 475.148 kb on + strand, within GFF1811 at 475.149 kb on - strand, within GFF1811 at 475.172 kb on + strand, within GFF1811 at 475.172 kb on + strand, within GFF1811 at 475.172 kb on + strand, within GFF1811 at 475.172 kb on + strand, within GFF1811 at 475.172 kb on + strand, within GFF1811 at 475.173 kb on - strand, within GFF1811 at 475.173 kb on - strand, within GFF1811 at 475.173 kb on - strand, within GFF1811 at 475.214 kb on + strand, within GFF1811 at 475.214 kb on + strand, within GFF1811 at 475.215 kb on - strand, within GFF1811 at 475.215 kb on - strand, within GFF1811 at 475.215 kb on - strand, within GFF1811 at 475.289 kb on + strand, within GFF1811 at 475.289 kb on + strand, within GFF1811 at 475.289 kb on + strand, within GFF1811 at 475.290 kb on - strand, within GFF1811 at 475.290 kb on - strand, within GFF1811 at 475.290 kb on - strand, within GFF1811 at 475.290 kb on - strand, within GFF1811 at 475.337 kb on + strand, within GFF1811 at 475.338 kb on - strand, within GFF1811 at 475.338 kb on - strand, within GFF1811 at 475.745 kb on + strand, within GFF1811 at 475.745 kb on + strand, within GFF1811 at 475.745 kb on + strand, within GFF1811 at 475.746 kb on - strand, within GFF1811 at 475.746 kb on - strand, within GFF1811 at 475.826 kb on + strand, within GFF1811 at 475.917 kb on - strand, within GFF1811 at 475.917 kb on - strand, within GFF1811 at 475.917 kb on - strand, within GFF1811 at 475.917 kb on - strand, within GFF1811 at 476.048 kb on + strand at 476.048 kb on + strand at 476.049 kb on - strand at 476.429 kb on - strand, within GFF1812 at 476.429 kb on - strand, within GFF1812 at 476.429 kb on - strand, within GFF1812 at 476.429 kb on - strand, within GFF1812 at 476.458 kb on + strand, within GFF1812 at 476.458 kb on + strand, within GFF1812 at 476.458 kb on + strand, within GFF1812 at 476.459 kb on - strand, within GFF1812 at 476.648 kb on - strand, within GFF1812 at 476.852 kb on - strand at 476.912 kb on + strand, within GFF1813 at 476.912 kb on + strand, within GFF1813 at 476.913 kb on - strand, within GFF1813 at 476.942 kb on + strand, within GFF1813 at 476.942 kb on + strand, within GFF1813 at 476.943 kb on - strand, within GFF1813 at 476.943 kb on - strand, within GFF1813 at 476.943 kb on - strand, within GFF1813 at 476.960 kb on + strand, within GFF1813 at 476.960 kb on + strand, within GFF1813 at 476.960 kb on + strand, within GFF1813 at 476.960 kb on + strand, within GFF1813 at 477.302 kb on + strand, within GFF1813 at 477.302 kb on + strand, within GFF1813 at 477.303 kb on - strand, within GFF1813 at 477.320 kb on + strand, within GFF1813 at 477.320 kb on + strand, within GFF1813 at 477.320 kb on + strand, within GFF1813 at 477.321 kb on - strand, within GFF1813 at 477.321 kb on - strand, within GFF1813 at 477.321 kb on - strand, within GFF1813 at 477.452 kb on + strand, within GFF1813 at 477.452 kb on + strand, within GFF1813 at 477.453 kb on - strand, within GFF1813 at 477.453 kb on - strand, within GFF1813 at 477.545 kb on + strand, within GFF1813 at 477.545 kb on + strand, within GFF1813 at 477.545 kb on + strand, within GFF1813 at 477.690 kb on - strand, within GFF1813
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 475,148 + GFF1811 0.29 -0.7 475,149 - GFF1811 0.29 -1.8 475,172 + GFF1811 0.31 -1.0 475,172 + GFF1811 0.31 -1.3 475,172 + GFF1811 0.31 -1.6 475,172 + GFF1811 0.31 -1.7 475,172 + GFF1811 0.31 -0.4 475,173 - GFF1811 0.31 +0.9 475,173 - GFF1811 0.31 +0.2 475,173 - GFF1811 0.31 -1.5 475,214 + GFF1811 0.34 +1.7 475,214 + GFF1811 0.34 +0.3 475,215 - GFF1811 0.34 -2.8 475,215 - GFF1811 0.34 -3.3 475,215 - GFF1811 0.34 +0.8 475,289 + GFF1811 0.40 -0.8 475,289 + GFF1811 0.40 -0.4 475,289 + GFF1811 0.40 -0.6 475,290 - GFF1811 0.40 +0.3 475,290 - GFF1811 0.40 +0.6 475,290 - GFF1811 0.40 +0.6 475,290 - GFF1811 0.40 -1.9 475,337 + GFF1811 0.43 -1.3 475,338 - GFF1811 0.43 +0.2 475,338 - GFF1811 0.43 +1.2 475,745 + GFF1811 0.74 -0.1 475,745 + GFF1811 0.74 -1.1 475,745 + GFF1811 0.74 -2.2 475,746 - GFF1811 0.74 +2.0 475,746 - GFF1811 0.74 -0.2 475,826 + GFF1811 0.80 +1.1 475,917 - GFF1811 0.86 +0.1 475,917 - GFF1811 0.86 -0.9 475,917 - GFF1811 0.86 -0.7 475,917 - GFF1811 0.86 -0.1 476,048 + -0.5 476,048 + +1.2 476,049 - -1.0 476,429 - GFF1812 0.51 -1.6 476,429 - GFF1812 0.51 -0.2 476,429 - GFF1812 0.51 -0.6 476,429 - GFF1812 0.51 -1.2 476,458 + GFF1812 0.55 -0.0 476,458 + GFF1812 0.55 -2.6 476,458 + GFF1812 0.55 -1.7 476,459 - GFF1812 0.55 -3.2 476,648 - GFF1812 0.84 +0.2 476,852 - -0.4 476,912 + GFF1813 0.10 +1.4 476,912 + GFF1813 0.10 +1.2 476,913 - GFF1813 0.10 +1.1 476,942 + GFF1813 0.13 +0.5 476,942 + GFF1813 0.13 +0.5 476,943 - GFF1813 0.13 -2.8 476,943 - GFF1813 0.13 -1.9 476,943 - GFF1813 0.13 -0.2 476,960 + GFF1813 0.14 -0.4 476,960 + GFF1813 0.14 +1.6 476,960 + GFF1813 0.14 +0.6 476,960 + GFF1813 0.14 -1.5 477,302 + GFF1813 0.42 -1.4 477,302 + GFF1813 0.42 -2.3 477,303 - GFF1813 0.42 -0.1 477,320 + GFF1813 0.43 -1.3 477,320 + GFF1813 0.43 +0.6 477,320 + GFF1813 0.43 -0.7 477,321 - GFF1813 0.43 +0.4 477,321 - GFF1813 0.43 -2.2 477,321 - GFF1813 0.43 -1.0 477,452 + GFF1813 0.54 -0.9 477,452 + GFF1813 0.54 -4.0 477,453 - GFF1813 0.54 +0.8 477,453 - GFF1813 0.54 -1.0 477,545 + GFF1813 0.62 -0.4 477,545 + GFF1813 0.62 -2.0 477,545 + GFF1813 0.62 -0.5 477,690 - GFF1813 0.74 -1.8
Or see this region's nucleotide sequence