Strain Fitness in Variovorax sp. SCN45 around GFF1802

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1801 and GFF1802 are separated by 31 nucleotidesGFF1802 and GFF1803 are separated by 10 nucleotidesGFF1803 and GFF1804 are separated by 137 nucleotides GFF1801 - Transcriptional regulator, LysR family, at 464,443 to 465,345 GFF1801 GFF1802 - Lignostilbene-alpha,beta-dioxygenase and related enzymes, at 465,377 to 466,876 GFF1802 GFF1803 - hypothetical protein, at 466,887 to 467,324 GFF1803 GFF1804 - Uncharacterized UPF0118 membrane protein, at 467,462 to 468,580 GFF1804 Position (kb) 465 466 467Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 464.422 kb on + strandat 464.635 kb on + strand, within GFF1801at 464.635 kb on + strand, within GFF1801at 464.638 kb on + strand, within GFF1801at 464.638 kb on + strand, within GFF1801at 464.639 kb on - strand, within GFF1801at 464.639 kb on - strand, within GFF1801at 464.639 kb on - strand, within GFF1801at 464.639 kb on - strand, within GFF1801at 464.782 kb on + strand, within GFF1801at 464.782 kb on + strand, within GFF1801at 464.782 kb on + strand, within GFF1801at 464.782 kb on + strand, within GFF1801at 464.782 kb on + strand, within GFF1801at 464.783 kb on - strand, within GFF1801at 464.783 kb on - strand, within GFF1801at 464.783 kb on - strand, within GFF1801at 464.783 kb on - strand, within GFF1801at 464.783 kb on - strand, within GFF1801at 464.954 kb on - strand, within GFF1801at 465.169 kb on + strand, within GFF1801at 465.170 kb on - strand, within GFF1801at 465.170 kb on - strand, within GFF1801at 465.170 kb on - strand, within GFF1801at 465.170 kb on - strand, within GFF1801at 465.356 kb on + strandat 465.420 kb on + strandat 465.420 kb on + strandat 465.552 kb on + strand, within GFF1802at 465.552 kb on + strand, within GFF1802at 465.552 kb on + strand, within GFF1802at 465.552 kb on + strand, within GFF1802at 465.552 kb on + strand, within GFF1802at 465.552 kb on + strand, within GFF1802at 465.553 kb on - strand, within GFF1802at 465.553 kb on - strand, within GFF1802at 465.553 kb on - strand, within GFF1802at 465.553 kb on - strand, within GFF1802at 465.553 kb on - strand, within GFF1802at 465.879 kb on + strand, within GFF1802at 465.879 kb on + strand, within GFF1802at 466.081 kb on - strand, within GFF1802at 466.203 kb on + strand, within GFF1802at 466.204 kb on - strand, within GFF1802at 466.486 kb on - strand, within GFF1802at 466.537 kb on - strand, within GFF1802at 466.614 kb on + strand, within GFF1802at 466.615 kb on - strand, within GFF1802at 466.615 kb on - strand, within GFF1802at 466.615 kb on - strand, within GFF1802at 466.991 kb on - strand, within GFF1803at 467.069 kb on - strand, within GFF1803at 467.094 kb on + strand, within GFF1803at 467.094 kb on + strand, within GFF1803at 467.176 kb on + strand, within GFF1803at 467.176 kb on + strand, within GFF1803at 467.188 kb on + strand, within GFF1803at 467.188 kb on + strand, within GFF1803at 467.188 kb on + strand, within GFF1803at 467.188 kb on + strand, within GFF1803at 467.189 kb on - strand, within GFF1803at 467.290 kb on - strandat 467.658 kb on + strand, within GFF1804at 467.658 kb on + strand, within GFF1804at 467.658 kb on + strand, within GFF1804at 467.658 kb on + strand, within GFF1804at 467.659 kb on - strand, within GFF1804at 467.659 kb on - strand, within GFF1804at 467.659 kb on - strand, within GFF1804at 467.659 kb on - strand, within GFF1804at 467.659 kb on - strand, within GFF1804at 467.659 kb on - strand, within GFF1804at 467.659 kb on - strand, within GFF1804at 467.784 kb on + strand, within GFF1804at 467.784 kb on + strand, within GFF1804at 467.784 kb on + strand, within GFF1804at 467.784 kb on + strand, within GFF1804at 467.784 kb on + strand, within GFF1804at 467.785 kb on - strand, within GFF1804at 467.785 kb on - strand, within GFF1804at 467.785 kb on - strand, within GFF1804at 467.785 kb on - strand, within GFF1804at 467.785 kb on - strand, within GFF1804at 467.785 kb on - strand, within GFF1804

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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464,422 + +0.4
464,635 + GFF1801 0.21 -0.2
464,635 + GFF1801 0.21 +2.0
464,638 + GFF1801 0.22 -0.4
464,638 + GFF1801 0.22 -0.6
464,639 - GFF1801 0.22 +0.6
464,639 - GFF1801 0.22 -0.2
464,639 - GFF1801 0.22 +1.3
464,639 - GFF1801 0.22 -0.8
464,782 + GFF1801 0.38 -2.2
464,782 + GFF1801 0.38 -0.4
464,782 + GFF1801 0.38 -1.3
464,782 + GFF1801 0.38 -0.1
464,782 + GFF1801 0.38 +1.0
464,783 - GFF1801 0.38 -1.8
464,783 - GFF1801 0.38 +3.8
464,783 - GFF1801 0.38 +1.0
464,783 - GFF1801 0.38 -0.7
464,783 - GFF1801 0.38 -1.4
464,954 - GFF1801 0.57 -2.2
465,169 + GFF1801 0.80 -0.3
465,170 - GFF1801 0.81 +0.2
465,170 - GFF1801 0.81 -0.6
465,170 - GFF1801 0.81 -2.2
465,170 - GFF1801 0.81 +3.0
465,356 + +0.9
465,420 + +1.8
465,420 + +2.6
465,552 + GFF1802 0.12 -0.5
465,552 + GFF1802 0.12 -2.4
465,552 + GFF1802 0.12 -1.2
465,552 + GFF1802 0.12 -1.6
465,552 + GFF1802 0.12 -1.4
465,552 + GFF1802 0.12 +0.2
465,553 - GFF1802 0.12 +0.3
465,553 - GFF1802 0.12 +0.1
465,553 - GFF1802 0.12 +1.2
465,553 - GFF1802 0.12 -0.8
465,553 - GFF1802 0.12 -1.2
465,879 + GFF1802 0.33 -1.2
465,879 + GFF1802 0.33 -0.2
466,081 - GFF1802 0.47 -0.9
466,203 + GFF1802 0.55 -0.8
466,204 - GFF1802 0.55 +2.2
466,486 - GFF1802 0.74 -0.3
466,537 - GFF1802 0.77 +0.6
466,614 + GFF1802 0.82 -2.6
466,615 - GFF1802 0.83 +0.7
466,615 - GFF1802 0.83 -1.1
466,615 - GFF1802 0.83 +0.2
466,991 - GFF1803 0.24 +2.0
467,069 - GFF1803 0.42 -0.3
467,094 + GFF1803 0.47 +0.2
467,094 + GFF1803 0.47 -0.2
467,176 + GFF1803 0.66 -2.7
467,176 + GFF1803 0.66 -1.3
467,188 + GFF1803 0.69 +2.2
467,188 + GFF1803 0.69 +0.2
467,188 + GFF1803 0.69 -1.2
467,188 + GFF1803 0.69 -0.2
467,189 - GFF1803 0.69 +1.1
467,290 - -1.3
467,658 + GFF1804 0.18 +0.2
467,658 + GFF1804 0.18 +0.7
467,658 + GFF1804 0.18 +1.2
467,658 + GFF1804 0.18 -1.6
467,659 - GFF1804 0.18 +0.6
467,659 - GFF1804 0.18 -0.1
467,659 - GFF1804 0.18 -2.8
467,659 - GFF1804 0.18 -2.2
467,659 - GFF1804 0.18 -2.5
467,659 - GFF1804 0.18 -0.8
467,659 - GFF1804 0.18 -0.8
467,784 + GFF1804 0.29 -0.1
467,784 + GFF1804 0.29 -1.2
467,784 + GFF1804 0.29 -1.7
467,784 + GFF1804 0.29 +2.0
467,784 + GFF1804 0.29 +0.4
467,785 - GFF1804 0.29 -1.7
467,785 - GFF1804 0.29 +0.6
467,785 - GFF1804 0.29 -0.6
467,785 - GFF1804 0.29 +1.2
467,785 - GFF1804 0.29 -0.2
467,785 - GFF1804 0.29 +0.5

Or see this region's nucleotide sequence