Strain Fitness in Variovorax sp. SCN45 around GFF1759

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1758 and GFF1759 are separated by 42 nucleotidesGFF1759 and GFF1760 are separated by 39 nucleotides GFF1758 - KEGG: carboxymethylenebutenolidase , at 419,811 to 420,653 GFF1758 GFF1759 - PQQ-dependent oxidoreductase, gdhB family, at 420,696 to 421,922 GFF1759 GFF1760 - Probable transmembrane protein, at 421,962 to 423,167 GFF1760 Position (kb) 420 421 422Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 419.712 kb on - strandat 419.712 kb on - strandat 419.712 kb on - strandat 419.791 kb on + strandat 419.792 kb on - strandat 419.792 kb on - strandat 419.792 kb on - strandat 419.792 kb on - strandat 419.792 kb on - strandat 419.794 kb on + strandat 419.795 kb on - strandat 419.795 kb on - strandat 419.802 kb on + strandat 419.802 kb on + strandat 419.802 kb on + strandat 419.803 kb on - strandat 419.803 kb on - strandat 419.847 kb on + strandat 419.847 kb on + strandat 419.848 kb on - strandat 419.979 kb on + strand, within GFF1758at 419.980 kb on - strand, within GFF1758at 419.980 kb on - strand, within GFF1758at 420.091 kb on - strand, within GFF1758at 420.117 kb on + strand, within GFF1758at 420.117 kb on + strand, within GFF1758at 420.118 kb on - strand, within GFF1758at 420.118 kb on - strand, within GFF1758at 420.118 kb on - strand, within GFF1758at 420.118 kb on - strand, within GFF1758at 420.294 kb on + strand, within GFF1758at 420.295 kb on - strand, within GFF1758at 420.295 kb on - strand, within GFF1758at 420.438 kb on + strand, within GFF1758at 420.439 kb on - strand, within GFF1758at 420.543 kb on + strand, within GFF1758at 420.544 kb on - strand, within GFF1758at 420.544 kb on - strand, within GFF1758at 420.576 kb on - strandat 420.585 kb on + strandat 420.586 kb on - strandat 420.586 kb on - strandat 420.586 kb on - strandat 420.916 kb on + strand, within GFF1759at 420.916 kb on + strand, within GFF1759at 420.916 kb on + strand, within GFF1759at 420.916 kb on + strand, within GFF1759at 420.917 kb on - strand, within GFF1759at 420.917 kb on - strand, within GFF1759at 420.955 kb on + strand, within GFF1759at 420.955 kb on + strand, within GFF1759at 420.955 kb on + strand, within GFF1759at 420.956 kb on - strand, within GFF1759at 420.956 kb on - strand, within GFF1759at 420.956 kb on - strand, within GFF1759at 421.015 kb on + strand, within GFF1759at 421.016 kb on - strand, within GFF1759at 421.027 kb on + strand, within GFF1759at 421.028 kb on - strand, within GFF1759at 421.048 kb on + strand, within GFF1759at 421.048 kb on + strand, within GFF1759at 421.048 kb on + strand, within GFF1759at 421.048 kb on + strand, within GFF1759at 421.049 kb on - strand, within GFF1759at 421.049 kb on - strand, within GFF1759at 421.049 kb on - strand, within GFF1759at 421.049 kb on - strand, within GFF1759at 421.207 kb on + strand, within GFF1759at 421.207 kb on + strand, within GFF1759at 421.207 kb on + strand, within GFF1759at 421.207 kb on + strand, within GFF1759at 421.207 kb on + strand, within GFF1759at 421.208 kb on - strand, within GFF1759at 421.208 kb on - strand, within GFF1759at 421.588 kb on + strand, within GFF1759at 421.589 kb on - strand, within GFF1759at 421.589 kb on - strand, within GFF1759at 421.589 kb on - strand, within GFF1759at 421.589 kb on - strand, within GFF1759at 421.597 kb on + strand, within GFF1759at 421.597 kb on + strand, within GFF1759at 421.598 kb on - strand, within GFF1759at 421.598 kb on - strand, within GFF1759at 421.598 kb on - strand, within GFF1759at 421.633 kb on + strand, within GFF1759at 421.633 kb on + strand, within GFF1759at 421.633 kb on + strand, within GFF1759at 421.634 kb on - strand, within GFF1759at 421.663 kb on + strand, within GFF1759at 421.664 kb on - strand, within GFF1759at 421.720 kb on + strand, within GFF1759at 421.720 kb on + strand, within GFF1759at 421.720 kb on + strand, within GFF1759at 421.720 kb on + strand, within GFF1759at 421.720 kb on + strand, within GFF1759at 421.720 kb on + strand, within GFF1759at 421.720 kb on + strand, within GFF1759at 421.721 kb on - strand, within GFF1759at 421.721 kb on - strand, within GFF1759at 421.721 kb on - strand, within GFF1759at 421.721 kb on - strand, within GFF1759at 421.955 kb on + strandat 421.964 kb on - strandat 421.964 kb on - strandat 422.107 kb on + strand, within GFF1760at 422.107 kb on + strand, within GFF1760at 422.108 kb on - strand, within GFF1760at 422.108 kb on - strand, within GFF1760at 422.108 kb on - strand, within GFF1760at 422.108 kb on - strand, within GFF1760at 422.668 kb on + strand, within GFF1760at 422.668 kb on + strand, within GFF1760at 422.668 kb on + strand, within GFF1760at 422.669 kb on - strand, within GFF1760at 422.669 kb on - strand, within GFF1760at 422.669 kb on - strand, within GFF1760at 422.821 kb on + strand, within GFF1760at 422.821 kb on + strand, within GFF1760at 422.821 kb on + strand, within GFF1760at 422.821 kb on + strand, within GFF1760at 422.821 kb on + strand, within GFF1760at 422.822 kb on - strand, within GFF1760at 422.822 kb on - strand, within GFF1760at 422.822 kb on - strand, within GFF1760at 422.836 kb on + strand, within GFF1760at 422.837 kb on - strand, within GFF1760at 422.866 kb on + strand, within GFF1760at 422.866 kb on + strand, within GFF1760at 422.866 kb on + strand, within GFF1760

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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419,712 - -1.3
419,712 - +0.8
419,712 - +0.9
419,791 + -0.2
419,792 - +2.2
419,792 - +2.0
419,792 - +2.2
419,792 - +0.3
419,792 - -3.7
419,794 + +0.3
419,795 - +0.1
419,795 - -1.3
419,802 + -0.5
419,802 + +0.3
419,802 + +0.2
419,803 - +2.6
419,803 - +1.6
419,847 + -0.0
419,847 + -0.4
419,848 - -0.6
419,979 + GFF1758 0.20 -1.3
419,980 - GFF1758 0.20 +0.5
419,980 - GFF1758 0.20 -0.2
420,091 - GFF1758 0.33 -0.2
420,117 + GFF1758 0.36 -1.3
420,117 + GFF1758 0.36 +0.0
420,118 - GFF1758 0.36 -1.3
420,118 - GFF1758 0.36 -2.5
420,118 - GFF1758 0.36 -0.9
420,118 - GFF1758 0.36 +0.4
420,294 + GFF1758 0.57 -1.0
420,295 - GFF1758 0.57 -0.7
420,295 - GFF1758 0.57 -0.2
420,438 + GFF1758 0.74 -2.7
420,439 - GFF1758 0.74 +0.4
420,543 + GFF1758 0.87 -0.5
420,544 - GFF1758 0.87 -2.0
420,544 - GFF1758 0.87 +1.0
420,576 - +1.0
420,585 + +3.1
420,586 - +0.8
420,586 - +0.2
420,586 - -0.4
420,916 + GFF1759 0.18 -1.3
420,916 + GFF1759 0.18 -1.0
420,916 + GFF1759 0.18 +1.0
420,916 + GFF1759 0.18 +0.6
420,917 - GFF1759 0.18 -0.9
420,917 - GFF1759 0.18 +0.8
420,955 + GFF1759 0.21 -2.4
420,955 + GFF1759 0.21 +0.1
420,955 + GFF1759 0.21 -0.8
420,956 - GFF1759 0.21 +0.2
420,956 - GFF1759 0.21 -0.9
420,956 - GFF1759 0.21 -2.6
421,015 + GFF1759 0.26 -0.9
421,016 - GFF1759 0.26 +0.4
421,027 + GFF1759 0.27 +0.2
421,028 - GFF1759 0.27 -1.4
421,048 + GFF1759 0.29 +0.4
421,048 + GFF1759 0.29 -1.9
421,048 + GFF1759 0.29 -1.9
421,048 + GFF1759 0.29 -0.3
421,049 - GFF1759 0.29 -2.6
421,049 - GFF1759 0.29 -2.6
421,049 - GFF1759 0.29 -1.0
421,049 - GFF1759 0.29 +0.0
421,207 + GFF1759 0.42 +0.9
421,207 + GFF1759 0.42 +0.2
421,207 + GFF1759 0.42 +0.8
421,207 + GFF1759 0.42 +1.3
421,207 + GFF1759 0.42 -0.5
421,208 - GFF1759 0.42 +1.8
421,208 - GFF1759 0.42 -1.3
421,588 + GFF1759 0.73 -1.2
421,589 - GFF1759 0.73 +1.8
421,589 - GFF1759 0.73 +2.7
421,589 - GFF1759 0.73 +0.7
421,589 - GFF1759 0.73 -0.4
421,597 + GFF1759 0.73 +3.0
421,597 + GFF1759 0.73 -1.6
421,598 - GFF1759 0.74 -1.0
421,598 - GFF1759 0.74 +0.8
421,598 - GFF1759 0.74 -0.2
421,633 + GFF1759 0.76 -0.4
421,633 + GFF1759 0.76 +1.6
421,633 + GFF1759 0.76 +0.3
421,634 - GFF1759 0.76 +2.2
421,663 + GFF1759 0.79 -0.3
421,664 - GFF1759 0.79 -1.4
421,720 + GFF1759 0.83 -0.3
421,720 + GFF1759 0.83 -1.9
421,720 + GFF1759 0.83 -2.1
421,720 + GFF1759 0.83 -1.4
421,720 + GFF1759 0.83 -0.2
421,720 + GFF1759 0.83 +0.1
421,720 + GFF1759 0.83 +0.3
421,721 - GFF1759 0.84 -1.0
421,721 - GFF1759 0.84 +1.0
421,721 - GFF1759 0.84 -1.2
421,721 - GFF1759 0.84 +1.0
421,955 + +0.3
421,964 - -0.6
421,964 - -0.6
422,107 + GFF1760 0.12 +1.4
422,107 + GFF1760 0.12 -0.3
422,108 - GFF1760 0.12 -2.4
422,108 - GFF1760 0.12 +0.3
422,108 - GFF1760 0.12 -0.5
422,108 - GFF1760 0.12 +0.7
422,668 + GFF1760 0.59 -2.1
422,668 + GFF1760 0.59 -2.2
422,668 + GFF1760 0.59 +0.9
422,669 - GFF1760 0.59 -0.8
422,669 - GFF1760 0.59 -0.4
422,669 - GFF1760 0.59 +1.2
422,821 + GFF1760 0.71 +0.2
422,821 + GFF1760 0.71 +2.8
422,821 + GFF1760 0.71 -2.5
422,821 + GFF1760 0.71 -0.3
422,821 + GFF1760 0.71 -2.0
422,822 - GFF1760 0.71 -2.2
422,822 - GFF1760 0.71 +0.1
422,822 - GFF1760 0.71 +0.2
422,836 + GFF1760 0.72 -0.4
422,837 - GFF1760 0.73 +0.7
422,866 + GFF1760 0.75 +0.7
422,866 + GFF1760 0.75 -0.1
422,866 + GFF1760 0.75 +0.6

Or see this region's nucleotide sequence