Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1604 and GFF1605 are separated by 108 nucleotides GFF1605 and GFF1606 are separated by 3 nucleotides GFF1606 and GFF1607 are separated by 92 nucleotides
GFF1604 - Prolidase (EC 3.4.13.9), at 201,731 to 202,996
GFF1604
GFF1605 - no description, at 203,105 to 203,686
GFF1605
GFF1606 - Cys-tRNA(Pro) deacylase YbaK, at 203,690 to 205,276
GFF1606
GFF1607 - D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.2), at 205,369 to 206,814
GFF1607
Position (kb) 203
204
205
206 Strain fitness (log2 ratio) -2
-1
0
1
2 at 202.851 kb on + strand, within GFF1604 at 202.988 kb on + strand at 203.023 kb on - strand at 203.045 kb on - strand at 203.075 kb on + strand at 203.114 kb on - strand at 203.114 kb on - strand at 203.263 kb on + strand, within GFF1605 at 203.264 kb on - strand, within GFF1605 at 203.584 kb on + strand, within GFF1605 at 203.612 kb on + strand, within GFF1605 at 203.612 kb on + strand, within GFF1605 at 203.612 kb on + strand, within GFF1605 at 203.612 kb on + strand, within GFF1605 at 203.612 kb on + strand, within GFF1605 at 203.612 kb on + strand, within GFF1605 at 203.613 kb on - strand, within GFF1605 at 203.613 kb on - strand, within GFF1605 at 203.613 kb on - strand, within GFF1605 at 203.636 kb on + strand at 203.710 kb on - strand at 203.710 kb on - strand at 204.313 kb on - strand, within GFF1606 at 204.541 kb on - strand, within GFF1606 at 204.921 kb on + strand, within GFF1606 at 204.921 kb on + strand, within GFF1606 at 204.921 kb on + strand, within GFF1606 at 204.921 kb on + strand, within GFF1606 at 204.921 kb on + strand, within GFF1606 at 204.921 kb on + strand, within GFF1606 at 204.921 kb on + strand, within GFF1606 at 204.922 kb on - strand, within GFF1606 at 204.922 kb on - strand, within GFF1606 at 204.936 kb on - strand, within GFF1606 at 205.117 kb on - strand, within GFF1606 at 205.335 kb on - strand at 205.335 kb on - strand at 205.358 kb on - strand at 205.840 kb on + strand, within GFF1607 at 206.055 kb on + strand, within GFF1607 at 206.087 kb on - strand, within GFF1607 at 206.123 kb on - strand, within GFF1607 at 206.123 kb on - strand, within GFF1607 at 206.209 kb on + strand, within GFF1607 at 206.210 kb on - strand, within GFF1607
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 202,851 + GFF1604 0.88 -0.5 202,988 + +0.2 203,023 - -0.9 203,045 - -2.6 203,075 + +0.5 203,114 - -2.1 203,114 - -1.0 203,263 + GFF1605 0.27 -0.0 203,264 - GFF1605 0.27 -1.2 203,584 + GFF1605 0.82 -0.2 203,612 + GFF1605 0.87 -0.5 203,612 + GFF1605 0.87 +0.6 203,612 + GFF1605 0.87 +1.4 203,612 + GFF1605 0.87 -0.4 203,612 + GFF1605 0.87 +1.0 203,612 + GFF1605 0.87 +1.2 203,613 - GFF1605 0.87 -0.8 203,613 - GFF1605 0.87 +1.6 203,613 - GFF1605 0.87 -0.3 203,636 + -2.7 203,710 - -0.7 203,710 - -0.2 204,313 - GFF1606 0.39 -0.2 204,541 - GFF1606 0.54 +0.3 204,921 + GFF1606 0.78 -1.0 204,921 + GFF1606 0.78 +0.7 204,921 + GFF1606 0.78 -1.7 204,921 + GFF1606 0.78 +0.9 204,921 + GFF1606 0.78 -0.8 204,921 + GFF1606 0.78 +0.2 204,921 + GFF1606 0.78 +1.4 204,922 - GFF1606 0.78 -0.9 204,922 - GFF1606 0.78 +0.8 204,936 - GFF1606 0.79 -0.2 205,117 - GFF1606 0.90 -0.1 205,335 - +0.5 205,335 - -2.0 205,358 - -1.0 205,840 + GFF1607 0.33 +1.9 206,055 + GFF1607 0.47 -0.7 206,087 - GFF1607 0.50 +0.1 206,123 - GFF1607 0.52 -1.2 206,123 - GFF1607 0.52 -0.4 206,209 + GFF1607 0.58 -0.5 206,210 - GFF1607 0.58 -0.2
Or see this region's nucleotide sequence