Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1565 and GFF1566 are separated by 551 nucleotides GFF1566 and GFF1567 are separated by 63 nucleotides GFF1567 and GFF1568 are separated by 30 nucleotides GFF1568 and GFF1569 are separated by 18 nucleotides
GFF1565 - hypothetical protein, at 165,742 to 166,905
GFF1565
GFF1566 - no description, at 167,457 to 167,657
GFF1566
GFF1567 - Demethylmenaquinone methyltransferase-like protein, at 167,721 to 168,446
GFF1567
GFF1568 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 168,477 to 169,262
GFF1568
GFF1569 - BUG/TctC family periplasmic protein, at 169,281 to 170,267
GFF1569
Position (kb) 167
168
169 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 166.783 kb on + strand, within GFF1565 at 166.784 kb on - strand, within GFF1565 at 166.903 kb on + strand at 166.904 kb on - strand at 166.904 kb on - strand at 166.904 kb on - strand at 166.904 kb on - strand at 167.029 kb on + strand at 167.029 kb on + strand at 167.046 kb on + strand at 167.115 kb on + strand at 167.115 kb on + strand at 167.115 kb on + strand at 167.116 kb on - strand at 167.247 kb on + strand at 167.252 kb on + strand at 167.252 kb on + strand at 167.252 kb on + strand at 167.253 kb on - strand at 167.253 kb on - strand at 167.256 kb on + strand at 167.257 kb on - strand at 167.314 kb on + strand at 167.352 kb on + strand at 167.352 kb on + strand at 167.352 kb on + strand at 167.436 kb on + strand at 167.436 kb on + strand at 167.437 kb on - strand at 167.559 kb on + strand, within GFF1566 at 167.559 kb on + strand, within GFF1566 at 167.571 kb on + strand, within GFF1566 at 167.571 kb on + strand, within GFF1566 at 167.571 kb on + strand, within GFF1566 at 167.571 kb on + strand, within GFF1566 at 167.572 kb on - strand, within GFF1566 at 167.572 kb on - strand, within GFF1566 at 167.572 kb on - strand, within GFF1566 at 167.572 kb on - strand, within GFF1566 at 167.572 kb on - strand, within GFF1566 at 167.574 kb on + strand, within GFF1566 at 167.651 kb on + strand at 167.651 kb on + strand at 167.651 kb on + strand at 167.655 kb on + strand at 167.655 kb on + strand at 167.655 kb on + strand at 167.655 kb on + strand at 167.655 kb on + strand at 167.655 kb on + strand at 167.655 kb on + strand at 167.655 kb on + strand at 167.655 kb on + strand at 167.656 kb on - strand at 167.656 kb on - strand at 167.656 kb on - strand at 167.656 kb on - strand at 167.656 kb on - strand at 167.656 kb on - strand at 167.871 kb on + strand, within GFF1567 at 167.871 kb on + strand, within GFF1567 at 167.871 kb on + strand, within GFF1567 at 167.871 kb on + strand, within GFF1567 at 167.872 kb on - strand, within GFF1567 at 167.872 kb on - strand, within GFF1567 at 168.130 kb on + strand, within GFF1567 at 168.130 kb on + strand, within GFF1567 at 168.447 kb on - strand at 168.447 kb on - strand at 168.447 kb on - strand at 168.529 kb on + strand at 168.530 kb on - strand at 168.530 kb on - strand at 168.530 kb on - strand at 168.726 kb on + strand, within GFF1568 at 169.348 kb on + strand at 169.348 kb on + strand at 169.348 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 166,783 + GFF1565 0.89 -2.7 166,784 - GFF1565 0.90 -1.4 166,903 + -0.3 166,904 - -0.2 166,904 - -1.2 166,904 - -0.3 166,904 - +0.6 167,029 + +0.9 167,029 + +0.4 167,046 + +1.2 167,115 + +0.8 167,115 + -0.7 167,115 + +0.1 167,116 - +1.6 167,247 + +0.7 167,252 + -1.7 167,252 + -0.7 167,252 + -0.7 167,253 - -0.0 167,253 - -3.2 167,256 + +1.2 167,257 - -1.9 167,314 + +0.1 167,352 + +0.3 167,352 + -1.0 167,352 + -0.2 167,436 + +0.4 167,436 + -2.3 167,437 - -1.1 167,559 + GFF1566 0.51 -0.1 167,559 + GFF1566 0.51 +0.9 167,571 + GFF1566 0.57 -0.2 167,571 + GFF1566 0.57 -1.1 167,571 + GFF1566 0.57 +1.2 167,571 + GFF1566 0.57 +0.9 167,572 - GFF1566 0.57 -2.0 167,572 - GFF1566 0.57 -2.2 167,572 - GFF1566 0.57 +0.1 167,572 - GFF1566 0.57 -1.6 167,572 - GFF1566 0.57 +1.4 167,574 + GFF1566 0.58 -0.9 167,651 + +0.9 167,651 + +0.1 167,651 + -0.9 167,655 + -0.5 167,655 + +1.1 167,655 + +2.1 167,655 + -1.4 167,655 + -0.5 167,655 + +0.9 167,655 + +0.4 167,655 + +1.2 167,655 + +0.1 167,656 - -0.2 167,656 - -0.8 167,656 - -2.6 167,656 - -1.7 167,656 - +0.2 167,656 - -1.5 167,871 + GFF1567 0.21 -0.5 167,871 + GFF1567 0.21 +0.5 167,871 + GFF1567 0.21 -1.8 167,871 + GFF1567 0.21 -0.4 167,872 - GFF1567 0.21 -0.5 167,872 - GFF1567 0.21 -0.2 168,130 + GFF1567 0.56 +0.5 168,130 + GFF1567 0.56 -1.6 168,447 - +3.6 168,447 - -1.4 168,447 - -1.2 168,529 + -0.0 168,530 - +3.6 168,530 - +0.5 168,530 - -3.1 168,726 + GFF1568 0.32 +3.0 169,348 + +0.1 169,348 + -0.0 169,348 + -1.5
Or see this region's nucleotide sequence