Strain Fitness in Variovorax sp. SCN45

Strain Fitness in Variovorax sp. SCN45 around GFF1527

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Community=guar; Passage=4
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122,286	+	GFF1526	0.39	+0.7
122,286	+	GFF1526	0.39	+3.6
122,286	+	GFF1526	0.39	-2.6
122,287	-	GFF1526	0.39	-0.9
122,287	-	GFF1526	0.39	-2.8
122,287	-	GFF1526	0.39	-1.4
122,287	-	GFF1526	0.39	-1.0
122,287	-	GFF1526	0.39	-2.2
122,287	-	GFF1526	0.39	-2.4
122,287	-	GFF1526	0.39	+0.2
122,391	+	GFF1526	0.48	+1.0
122,391	+	GFF1526	0.48	+0.2
122,391	+	GFF1526	0.48	-0.6
122,392	-	GFF1526	0.48	-0.9
122,392	-	GFF1526	0.48	+2.7
122,392	-	GFF1526	0.48	-1.4
122,392	-	GFF1526	0.48	+0.2
122,392	-	GFF1526	0.48	-1.0
122,527	-	GFF1526	0.60	-0.2
122,527	-	GFF1526	0.60	+1.5
122,527	-	GFF1526	0.60	-0.5
122,527	-	GFF1526	0.60	-0.2
122,600	-	GFF1526	0.66	-2.8
122,796	+	GFF1526	0.83	-0.3
122,804	+	GFF1526	0.84	-1.6
122,804	+	GFF1526	0.84	-1.4
123,130	+			-1.3
123,545	-	GFF1527	0.17	-0.9
123,682	+	GFF1527	0.22	+0.1
123,682	+	GFF1527	0.22	-0.4
123,683	-	GFF1527	0.22	+3.5
123,683	-	GFF1527	0.22	+0.8
123,710	-	GFF1527	0.23	+1.1
123,710	-	GFF1527	0.23	+0.6
123,728	-	GFF1527	0.24	+0.9
123,764	+	GFF1527	0.25	+0.7
123,765	-	GFF1527	0.25	+3.8
123,765	-	GFF1527	0.25	+0.5
123,775	+	GFF1527	0.26	+2.7
123,775	+	GFF1527	0.26	+0.6
123,775	+	GFF1527	0.26	+0.5
123,775	+	GFF1527	0.26	+1.0
123,776	-	GFF1527	0.26	-0.9
123,830	-	GFF1527	0.28	+1.9
123,877	+	GFF1527	0.30	+0.1
123,877	+	GFF1527	0.30	+0.5
123,877	+	GFF1527	0.30	+0.6
124,033	+	GFF1527	0.36	+1.2
124,065	+	GFF1527	0.38	-1.1
124,066	-	GFF1527	0.38	-1.4
124,078	+	GFF1527	0.38	-0.3
124,078	+	GFF1527	0.38	-0.9
124,079	-	GFF1527	0.38	-0.5
124,099	+	GFF1527	0.39	+0.4
124,099	+	GFF1527	0.39	-0.4
124,099	+	GFF1527	0.39	+0.9
124,099	+	GFF1527	0.39	-1.7
124,100	-	GFF1527	0.39	+0.5
124,100	-	GFF1527	0.39	-1.0
124,100	-	GFF1527	0.39	-2.2
124,162	+	GFF1527	0.42	+1.4
124,162	+	GFF1527	0.42	+0.6
124,163	-	GFF1527	0.42	-0.5
124,163	-	GFF1527	0.42	-1.3
124,196	-	GFF1527	0.43	+1.0
124,294	+	GFF1527	0.47	-0.6
124,294	+	GFF1527	0.47	+1.5
124,295	-	GFF1527	0.47	+0.0
124,375	+	GFF1527	0.50	-3.2
124,376	-	GFF1527	0.50	+0.8
124,387	+	GFF1527	0.51	+0.5
124,387	+	GFF1527	0.51	+1.1
124,388	-	GFF1527	0.51	+0.8
124,388	-	GFF1527	0.51	+1.1
124,489	+	GFF1527	0.55	+0.1
124,489	+	GFF1527	0.55	-1.2
124,580	-	GFF1527	0.59	-2.1
124,580	-	GFF1527	0.59	-0.2
124,705	+	GFF1527	0.64	-0.4
124,705	+	GFF1527	0.64	-2.6
124,705	+	GFF1527	0.64	+0.5
124,706	-	GFF1527	0.64	-0.4
124,706	-	GFF1527	0.64	+0.1
124,706	-	GFF1527	0.64	+2.0
124,706	-	GFF1527	0.64	+1.7
124,855	+	GFF1527	0.70	-0.2
124,855	+	GFF1527	0.70	-2.2
124,856	-	GFF1527	0.70	+2.1
124,984	+	GFF1527	0.75	+1.5
125,026	+	GFF1527	0.77	+0.3
125,027	-	GFF1527	0.77	-1.2
125,027	-	GFF1527	0.77	-1.8
125,167	+	GFF1527	0.82	-1.2
125,167	+	GFF1527	0.82	-0.9
125,167	+	GFF1527	0.82	+0.1
125,167	+	GFF1527	0.82	+1.0
125,173	+	GFF1527	0.83	+0.8
125,173	+	GFF1527	0.83	-0.2
125,173	+	GFF1527	0.83	-0.9
125,173	+	GFF1527	0.83	-2.2
125,173	+	GFF1527	0.83	+1.4
125,173	+	GFF1527	0.83	+0.2
125,173	+	GFF1527	0.83	+0.3
125,173	+	GFF1527	0.83	+0.2
125,173	+	GFF1527	0.83	-1.2
125,173	+	GFF1527	0.83	-0.2
125,173	+	GFF1527	0.83	+0.8
125,173	+	GFF1527	0.83	+1.1
125,173	+	GFF1527	0.83	-0.3
125,173	+	GFF1527	0.83	+0.5
125,173	+	GFF1527	0.83	+0.0
125,173	+	GFF1527	0.83	-1.5
125,173	+	GFF1527	0.83	-1.5
125,174	-	GFF1527	0.83	-0.3
125,174	-	GFF1527	0.83	-0.5
125,174	-	GFF1527	0.83	-0.7
125,174	-	GFF1527	0.83	+0.6
125,174	-	GFF1527	0.83	-0.4
125,174	-	GFF1527	0.83	+0.5
125,174	-	GFF1527	0.83	-1.4
125,174	-	GFF1527	0.83	+2.9
125,281	+	GFF1527	0.87	-0.0
125,281	+	GFF1527	0.87	-0.6
125,281	+	GFF1527	0.87	+1.7
125,281	+	GFF1527	0.87	-0.2
125,282	-	GFF1527	0.87	-2.5
125,282	-	GFF1527	0.87	-0.9
125,339	-	GFF1527	0.89	+1.1
125,339	-	GFF1527	0.89	-0.7
125,339	-	GFF1527	0.89	-0.9
125,359	+			+0.3
125,420	-			-2.4
125,420	-			-0.8
125,420	-			-1.8
125,420	-			+1.6
125,428	+			+0.1
125,428	+			+0.5
125,428	+			+2.3
125,429	-			+1.4
125,446	+			+2.4
125,506	+			-0.2
125,506	+			-1.5
125,506	+			-1.2
125,507	-			-1.4
125,507	-			-0.1
125,549	-			-1.2
125,549	-			+0.6
125,549	-			-1.2
125,551	+			+0.6
125,551	+			-0.2
125,551	+			-0.5
125,551	+			-1.0
125,552	-			-0.1
125,587	+			+0.8
125,587	+			-1.5
125,587	+			+0.6
125,587	+			-3.6
125,951	-	GFF1528	0.28	-1.9
125,951	-	GFF1528	0.28	-1.8
125,951	-	GFF1528	0.28	-1.1
126,025	+	GFF1528	0.33	+2.6
126,026	-	GFF1528	0.34	+1.2
126,037	+	GFF1528	0.34	-0.3
126,037	+	GFF1528	0.34	-0.7
126,038	-	GFF1528	0.35	-0.4
126,050	+	GFF1528	0.35	-0.8
126,050	+	GFF1528	0.35	-3.3
126,050	+	GFF1528	0.35	+0.4
126,050	+	GFF1528	0.35	+1.1
126,050	+	GFF1528	0.35	-0.2
126,050	+	GFF1528	0.35	-0.1
126,051	-	GFF1528	0.36	-2.5
126,051	-	GFF1528	0.36	-0.9
126,051	-	GFF1528	0.36	-2.0
126,136	+	GFF1528	0.42	+0.1
126,136	+	GFF1528	0.42	+1.0
126,136	+	GFF1528	0.42	-1.1
126,136	+	GFF1528	0.42	+0.1
126,136	+	GFF1528	0.42	+0.5
126,136	+	GFF1528	0.42	-0.1
126,137	-	GFF1528	0.42	-0.4
126,137	-	GFF1528	0.42	-0.5
126,137	-	GFF1528	0.42	-0.4
126,137	-	GFF1528	0.42	-2.8
126,137	-	GFF1528	0.42	+0.2
126,137	-	GFF1528	0.42	-0.6
126,138	+	GFF1528	0.43	-0.9
126,138	+	GFF1528	0.43	+1.4
126,138	+	GFF1528	0.43	-0.2
126,138	+	GFF1528	0.43	-2.8
126,139	-	GFF1528	0.43	-0.9
126,258	-	GFF1528	0.52	+0.1
126,384	-	GFF1528	0.62	-2.1
126,493	+	GFF1528	0.71	-0.2
126,494	-	GFF1528	0.71	-3.5
126,506	-	GFF1528	0.72	-0.2
126,506	-	GFF1528	0.72	+1.1
126,506	-	GFF1528	0.72	+1.1
126,514	+	GFF1528	0.72	+2.3
126,515	-	GFF1528	0.73	+1.3
126,580	+	GFF1528	0.78	+1.2
126,580	+	GFF1528	0.78	+1.2
126,581	-	GFF1528	0.78	-1.2
126,581	-	GFF1528	0.78	-0.9

Or see this region's nucleotide sequence