Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1437 and GFF1438 are separated by 81 nucleotides GFF1438 and GFF1439 are separated by 277 nucleotides GFF1439 and GFF1440 are separated by 116 nucleotides
GFF1437 - Transcriptional regulator, LysR family, at 28,005 to 28,901
GFF1437
GFF1438 - no description, at 28,983 to 29,237
GFF1438
GFF1439 - putative inositol monophosphatase, at 29,515 to 30,348
GFF1439
GFF1440 - Multidomain signal transduction protein including CheB-like methylesterase, CheR-like methyltransferase and BaeS-like histidine kinase, at 30,465 to 32,408
GFF1440
Position (kb) 29
30
31 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 28.731 kb on + strand, within GFF1437 at 28.731 kb on + strand, within GFF1437 at 28.731 kb on + strand, within GFF1437 at 28.731 kb on + strand, within GFF1437 at 28.731 kb on + strand, within GFF1437 at 28.731 kb on + strand, within GFF1437 at 28.731 kb on + strand, within GFF1437 at 28.731 kb on + strand, within GFF1437 at 28.731 kb on + strand, within GFF1437 at 28.732 kb on - strand, within GFF1437 at 28.732 kb on - strand, within GFF1437 at 28.732 kb on - strand, within GFF1437 at 28.827 kb on + strand at 28.827 kb on + strand at 28.827 kb on + strand at 28.828 kb on - strand at 28.828 kb on - strand at 28.828 kb on - strand at 28.828 kb on - strand at 28.828 kb on - strand at 28.828 kb on - strand at 28.828 kb on - strand at 28.828 kb on - strand at 28.829 kb on + strand at 28.829 kb on + strand at 28.829 kb on + strand at 28.829 kb on + strand at 28.830 kb on - strand at 28.830 kb on - strand at 28.830 kb on - strand at 28.842 kb on + strand at 28.842 kb on + strand at 28.843 kb on - strand at 28.900 kb on - strand at 29.056 kb on + strand, within GFF1438 at 29.056 kb on + strand, within GFF1438 at 29.056 kb on + strand, within GFF1438 at 29.056 kb on + strand, within GFF1438 at 29.056 kb on + strand, within GFF1438 at 29.057 kb on - strand, within GFF1438 at 29.057 kb on - strand, within GFF1438 at 29.057 kb on - strand, within GFF1438 at 29.057 kb on - strand, within GFF1438 at 29.074 kb on + strand, within GFF1438 at 29.075 kb on - strand, within GFF1438 at 29.163 kb on - strand, within GFF1438 at 29.185 kb on + strand, within GFF1438 at 29.185 kb on + strand, within GFF1438 at 29.185 kb on + strand, within GFF1438 at 29.185 kb on + strand, within GFF1438 at 29.185 kb on + strand, within GFF1438 at 29.185 kb on + strand, within GFF1438 at 29.185 kb on + strand, within GFF1438 at 29.185 kb on + strand, within GFF1438 at 29.186 kb on - strand, within GFF1438 at 29.186 kb on - strand, within GFF1438 at 29.224 kb on - strand at 29.363 kb on + strand at 29.363 kb on + strand at 29.363 kb on + strand at 29.363 kb on + strand at 29.364 kb on - strand at 29.364 kb on - strand at 29.364 kb on - strand at 29.364 kb on - strand at 29.364 kb on - strand at 29.549 kb on + strand at 29.550 kb on - strand at 30.167 kb on - strand, within GFF1439 at 30.167 kb on - strand, within GFF1439 at 30.256 kb on + strand, within GFF1439 at 30.257 kb on - strand, within GFF1439 at 30.398 kb on + strand at 30.398 kb on + strand at 30.399 kb on - strand at 30.399 kb on - strand at 30.399 kb on - strand at 30.399 kb on - strand at 30.399 kb on - strand at 30.412 kb on + strand at 30.412 kb on + strand at 30.412 kb on + strand at 30.413 kb on - strand at 30.556 kb on - strand at 30.585 kb on + strand at 30.657 kb on + strand at 30.657 kb on + strand at 30.658 kb on - strand at 30.700 kb on - strand, within GFF1440 at 30.969 kb on + strand, within GFF1440 at 30.970 kb on - strand, within GFF1440 at 30.970 kb on - strand, within GFF1440 at 30.999 kb on + strand, within GFF1440 at 30.999 kb on + strand, within GFF1440 at 31.000 kb on - strand, within GFF1440 at 31.041 kb on + strand, within GFF1440 at 31.041 kb on + strand, within GFF1440 at 31.042 kb on - strand, within GFF1440 at 31.083 kb on + strand, within GFF1440 at 31.083 kb on + strand, within GFF1440 at 31.084 kb on - strand, within GFF1440
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 28,731 + GFF1437 0.81 +1.4 28,731 + GFF1437 0.81 -1.7 28,731 + GFF1437 0.81 +1.4 28,731 + GFF1437 0.81 +1.2 28,731 + GFF1437 0.81 -1.7 28,731 + GFF1437 0.81 +1.7 28,731 + GFF1437 0.81 -1.1 28,731 + GFF1437 0.81 -1.9 28,731 + GFF1437 0.81 -0.1 28,732 - GFF1437 0.81 +0.2 28,732 - GFF1437 0.81 +0.5 28,732 - GFF1437 0.81 -0.3 28,827 + -0.2 28,827 + +1.7 28,827 + -0.6 28,828 - -0.8 28,828 - +0.5 28,828 - -0.4 28,828 - -0.8 28,828 - -1.2 28,828 - +0.5 28,828 - +0.7 28,828 - +0.7 28,829 + -1.6 28,829 + +2.1 28,829 + +0.6 28,829 + -0.7 28,830 - -0.3 28,830 - +0.7 28,830 - -1.4 28,842 + +1.1 28,842 + +0.9 28,843 - -0.5 28,900 - -0.3 29,056 + GFF1438 0.29 -0.7 29,056 + GFF1438 0.29 -0.0 29,056 + GFF1438 0.29 +0.7 29,056 + GFF1438 0.29 -1.5 29,056 + GFF1438 0.29 -0.3 29,057 - GFF1438 0.29 -3.8 29,057 - GFF1438 0.29 +1.8 29,057 - GFF1438 0.29 -0.1 29,057 - GFF1438 0.29 +0.3 29,074 + GFF1438 0.36 +0.6 29,075 - GFF1438 0.36 -2.2 29,163 - GFF1438 0.71 +2.7 29,185 + GFF1438 0.79 -0.8 29,185 + GFF1438 0.79 -2.4 29,185 + GFF1438 0.79 -0.7 29,185 + GFF1438 0.79 +1.1 29,185 + GFF1438 0.79 -1.2 29,185 + GFF1438 0.79 +2.1 29,185 + GFF1438 0.79 -0.0 29,185 + GFF1438 0.79 +0.1 29,186 - GFF1438 0.80 -1.5 29,186 - GFF1438 0.80 +2.8 29,224 - +0.7 29,363 + -0.5 29,363 + +1.3 29,363 + +0.7 29,363 + -0.1 29,364 - -2.4 29,364 - +1.4 29,364 - -0.7 29,364 - -0.5 29,364 - -2.0 29,549 + +0.9 29,550 - +0.9 30,167 - GFF1439 0.78 +1.0 30,167 - GFF1439 0.78 -2.3 30,256 + GFF1439 0.89 -1.7 30,257 - GFF1439 0.89 +0.8 30,398 + +0.8 30,398 + +0.3 30,399 - +0.9 30,399 - -0.5 30,399 - -0.0 30,399 - -2.9 30,399 - +2.1 30,412 + -0.0 30,412 + -0.5 30,412 + -0.5 30,413 - -0.1 30,556 - -0.9 30,585 + +0.4 30,657 + +1.9 30,657 + +2.6 30,658 - -1.4 30,700 - GFF1440 0.12 +0.1 30,969 + GFF1440 0.26 -0.9 30,970 - GFF1440 0.26 -1.1 30,970 - GFF1440 0.26 -1.5 30,999 + GFF1440 0.27 +1.4 30,999 + GFF1440 0.27 +0.5 31,000 - GFF1440 0.28 +0.8 31,041 + GFF1440 0.30 +0.9 31,041 + GFF1440 0.30 -0.0 31,042 - GFF1440 0.30 +0.6 31,083 + GFF1440 0.32 -1.1 31,083 + GFF1440 0.32 +1.6 31,084 - GFF1440 0.32 -0.5
Or see this region's nucleotide sequence