Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1212 and GFF1213 are separated by 10 nucleotides GFF1213 and GFF1214 are separated by 58 nucleotides GFF1214 and GFF1215 are separated by 73 nucleotides
GFF1212 - Oligopeptide transport permease protein OppC-like @ Glutathione ABC transporter, permease protein GsiD, at 530,715 to 531,641
GFF1212
GFF1213 - Oligopeptide transport permease protein OppB-like @ Glutathione ABC transporter, permease protein GsiC, at 531,652 to 532,572
GFF1213
GFF1214 - Oligopeptide transport substrate-binding protein @ Glutathione ABC transporter, substrate-binding protein GsiB, at 532,631 to 534,184
GFF1214
GFF1215 - Oligopeptide transport ATP-binding protein @ Glutathione ABC transporter, ATP-binding protein GsiA, at 534,258 to 536,135
GFF1215
Position (kb) 532
533
534
535 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 531.660 kb on - strand at 531.680 kb on + strand at 531.681 kb on - strand at 531.686 kb on + strand at 531.686 kb on + strand at 531.687 kb on - strand at 531.687 kb on - strand at 532.055 kb on + strand, within GFF1213 at 532.055 kb on + strand, within GFF1213 at 532.055 kb on + strand, within GFF1213 at 532.055 kb on + strand, within GFF1213 at 532.056 kb on - strand, within GFF1213 at 532.056 kb on - strand, within GFF1213 at 532.058 kb on - strand, within GFF1213 at 532.206 kb on - strand, within GFF1213 at 532.206 kb on - strand, within GFF1213 at 532.206 kb on - strand, within GFF1213 at 532.562 kb on + strand at 532.683 kb on + strand at 532.683 kb on + strand at 532.683 kb on + strand at 532.683 kb on + strand at 532.684 kb on - strand at 532.684 kb on - strand at 532.783 kb on - strand at 532.783 kb on - strand at 532.857 kb on + strand, within GFF1214 at 532.956 kb on + strand, within GFF1214 at 532.956 kb on + strand, within GFF1214 at 532.956 kb on + strand, within GFF1214 at 532.957 kb on - strand, within GFF1214 at 532.957 kb on - strand, within GFF1214 at 532.959 kb on + strand, within GFF1214 at 532.959 kb on + strand, within GFF1214 at 532.959 kb on + strand, within GFF1214 at 532.959 kb on + strand, within GFF1214 at 532.959 kb on + strand, within GFF1214 at 532.959 kb on + strand, within GFF1214 at 532.959 kb on + strand, within GFF1214 at 532.959 kb on + strand, within GFF1214 at 532.960 kb on - strand, within GFF1214 at 532.960 kb on - strand, within GFF1214 at 532.960 kb on - strand, within GFF1214 at 532.960 kb on - strand, within GFF1214 at 532.960 kb on - strand, within GFF1214 at 532.960 kb on - strand, within GFF1214 at 533.112 kb on + strand, within GFF1214 at 533.112 kb on + strand, within GFF1214 at 533.113 kb on - strand, within GFF1214 at 533.113 kb on - strand, within GFF1214 at 533.304 kb on + strand, within GFF1214 at 533.305 kb on - strand, within GFF1214 at 533.338 kb on - strand, within GFF1214 at 533.338 kb on - strand, within GFF1214 at 533.338 kb on - strand, within GFF1214 at 533.556 kb on + strand, within GFF1214 at 533.556 kb on + strand, within GFF1214 at 533.557 kb on - strand, within GFF1214 at 533.557 kb on - strand, within GFF1214 at 533.802 kb on + strand, within GFF1214 at 533.802 kb on + strand, within GFF1214 at 533.803 kb on - strand, within GFF1214 at 533.916 kb on + strand, within GFF1214 at 533.917 kb on - strand, within GFF1214 at 533.917 kb on - strand, within GFF1214 at 533.943 kb on + strand, within GFF1214 at 533.943 kb on + strand, within GFF1214 at 533.943 kb on + strand, within GFF1214 at 533.943 kb on + strand, within GFF1214 at 533.943 kb on + strand, within GFF1214 at 533.944 kb on - strand, within GFF1214 at 534.003 kb on + strand, within GFF1214 at 534.003 kb on + strand, within GFF1214 at 534.003 kb on + strand, within GFF1214 at 534.003 kb on + strand, within GFF1214 at 534.003 kb on + strand, within GFF1214 at 534.004 kb on - strand, within GFF1214 at 534.004 kb on - strand, within GFF1214 at 534.004 kb on - strand, within GFF1214 at 534.004 kb on - strand, within GFF1214 at 534.004 kb on - strand, within GFF1214 at 534.004 kb on - strand, within GFF1214 at 534.004 kb on - strand, within GFF1214 at 534.048 kb on + strand at 534.048 kb on + strand at 534.048 kb on + strand at 534.049 kb on - strand at 534.072 kb on + strand at 534.445 kb on + strand at 534.445 kb on + strand at 534.445 kb on + strand at 534.445 kb on + strand at 534.445 kb on + strand at 534.445 kb on + strand at 534.445 kb on + strand at 534.446 kb on - strand, within GFF1215 at 534.446 kb on - strand, within GFF1215 at 534.446 kb on - strand, within GFF1215 at 534.446 kb on - strand, within GFF1215 at 534.446 kb on - strand, within GFF1215 at 534.508 kb on + strand, within GFF1215 at 534.508 kb on + strand, within GFF1215 at 534.508 kb on + strand, within GFF1215 at 534.508 kb on + strand, within GFF1215 at 534.508 kb on + strand, within GFF1215 at 534.509 kb on - strand, within GFF1215 at 534.509 kb on - strand, within GFF1215 at 534.509 kb on - strand, within GFF1215 at 534.509 kb on - strand, within GFF1215 at 534.509 kb on - strand, within GFF1215 at 535.079 kb on - strand, within GFF1215 at 535.079 kb on - strand, within GFF1215
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 531,660 - -1.5 531,680 + -1.7 531,681 - +0.6 531,686 + +0.3 531,686 + +0.0 531,687 - +0.0 531,687 - -2.4 532,055 + GFF1213 0.44 -0.7 532,055 + GFF1213 0.44 +0.0 532,055 + GFF1213 0.44 -2.0 532,055 + GFF1213 0.44 +0.6 532,056 - GFF1213 0.44 +1.6 532,056 - GFF1213 0.44 -0.2 532,058 - GFF1213 0.44 +0.6 532,206 - GFF1213 0.60 -1.7 532,206 - GFF1213 0.60 -1.8 532,206 - GFF1213 0.60 +0.6 532,562 + +0.4 532,683 + +0.4 532,683 + -1.3 532,683 + -0.3 532,683 + -0.7 532,684 - +0.9 532,684 - +0.7 532,783 - +1.1 532,783 - +0.0 532,857 + GFF1214 0.15 -2.5 532,956 + GFF1214 0.21 -0.7 532,956 + GFF1214 0.21 +1.0 532,956 + GFF1214 0.21 -2.7 532,957 - GFF1214 0.21 +0.0 532,957 - GFF1214 0.21 +0.6 532,959 + GFF1214 0.21 -4.4 532,959 + GFF1214 0.21 -2.4 532,959 + GFF1214 0.21 -0.0 532,959 + GFF1214 0.21 +0.1 532,959 + GFF1214 0.21 -0.0 532,959 + GFF1214 0.21 +1.4 532,959 + GFF1214 0.21 -0.9 532,959 + GFF1214 0.21 -2.9 532,960 - GFF1214 0.21 +0.6 532,960 - GFF1214 0.21 -0.7 532,960 - GFF1214 0.21 -1.1 532,960 - GFF1214 0.21 +2.0 532,960 - GFF1214 0.21 +1.1 532,960 - GFF1214 0.21 +0.0 533,112 + GFF1214 0.31 +1.5 533,112 + GFF1214 0.31 -1.7 533,113 - GFF1214 0.31 -1.2 533,113 - GFF1214 0.31 +0.9 533,304 + GFF1214 0.43 -0.2 533,305 - GFF1214 0.43 +0.0 533,338 - GFF1214 0.45 -0.4 533,338 - GFF1214 0.45 +1.3 533,338 - GFF1214 0.45 -0.7 533,556 + GFF1214 0.60 -0.4 533,556 + GFF1214 0.60 +0.2 533,557 - GFF1214 0.60 -0.2 533,557 - GFF1214 0.60 +1.2 533,802 + GFF1214 0.75 -2.2 533,802 + GFF1214 0.75 +0.0 533,803 - GFF1214 0.75 +1.5 533,916 + GFF1214 0.83 -1.7 533,917 - GFF1214 0.83 -0.4 533,917 - GFF1214 0.83 -0.6 533,943 + GFF1214 0.84 -0.2 533,943 + GFF1214 0.84 +0.0 533,943 + GFF1214 0.84 -2.0 533,943 + GFF1214 0.84 -0.7 533,943 + GFF1214 0.84 -1.2 533,944 - GFF1214 0.84 -1.8 534,003 + GFF1214 0.88 +0.4 534,003 + GFF1214 0.88 -3.7 534,003 + GFF1214 0.88 +0.6 534,003 + GFF1214 0.88 -0.7 534,003 + GFF1214 0.88 -1.5 534,004 - GFF1214 0.88 +0.6 534,004 - GFF1214 0.88 -0.7 534,004 - GFF1214 0.88 +0.4 534,004 - GFF1214 0.88 -2.1 534,004 - GFF1214 0.88 +0.0 534,004 - GFF1214 0.88 -0.8 534,004 - GFF1214 0.88 +0.0 534,048 + -0.1 534,048 + +1.8 534,048 + -2.2 534,049 - +0.1 534,072 + -1.4 534,445 + -0.5 534,445 + -2.2 534,445 + -1.7 534,445 + +0.9 534,445 + +0.0 534,445 + -0.3 534,445 + +0.1 534,446 - GFF1215 0.10 +0.1 534,446 - GFF1215 0.10 -1.3 534,446 - GFF1215 0.10 -0.6 534,446 - GFF1215 0.10 -2.2 534,446 - GFF1215 0.10 +1.4 534,508 + GFF1215 0.13 -1.5 534,508 + GFF1215 0.13 +2.6 534,508 + GFF1215 0.13 -0.7 534,508 + GFF1215 0.13 -1.4 534,508 + GFF1215 0.13 +0.5 534,509 - GFF1215 0.13 -2.8 534,509 - GFF1215 0.13 +0.2 534,509 - GFF1215 0.13 -0.8 534,509 - GFF1215 0.13 +0.7 534,509 - GFF1215 0.13 -2.5 535,079 - GFF1215 0.44 +0.9 535,079 - GFF1215 0.44 +1.6
Or see this region's nucleotide sequence