Strain Fitness in Variovorax sp. SCN45 around GFF1093

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1092 and GFF1093 are separated by 30 nucleotidesGFF1093 and GFF1094 overlap by 4 nucleotidesGFF1094 and GFF1095 are separated by 17 nucleotides GFF1092 - Phosphate ABC transporter, substrate-binding protein PstS (TC 3.A.1.7.1), at 404,773 to 405,807 GFF1092 GFF1093 - Phosphate ABC transporter, permease protein PstC (TC 3.A.1.7.1), at 405,838 to 406,920 GFF1093 GFF1094 - Phosphate ABC transporter, permease protein PstA (TC 3.A.1.7.1), at 406,917 to 407,804 GFF1094 GFF1095 - Phosphate ABC transporter, ATP-binding protein PstB (TC 3.A.1.7.1), at 407,822 to 408,601 GFF1095 Position (kb) 405 406 407Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 404.884 kb on + strand, within GFF1092at 404.884 kb on + strand, within GFF1092at 404.885 kb on - strand, within GFF1092at 404.885 kb on - strand, within GFF1092at 404.885 kb on - strand, within GFF1092at 404.935 kb on + strand, within GFF1092at 404.936 kb on - strand, within GFF1092at 404.936 kb on - strand, within GFF1092at 405.148 kb on + strand, within GFF1092at 405.148 kb on + strand, within GFF1092at 405.148 kb on + strand, within GFF1092at 405.148 kb on + strand, within GFF1092at 405.148 kb on + strand, within GFF1092at 405.148 kb on + strand, within GFF1092at 405.148 kb on + strand, within GFF1092at 405.148 kb on + strand, within GFF1092at 405.149 kb on - strand, within GFF1092at 405.149 kb on - strand, within GFF1092at 405.280 kb on + strand, within GFF1092at 405.280 kb on + strand, within GFF1092at 405.280 kb on + strand, within GFF1092at 405.280 kb on + strand, within GFF1092at 405.281 kb on - strand, within GFF1092at 405.281 kb on - strand, within GFF1092at 405.281 kb on - strand, within GFF1092at 405.424 kb on + strand, within GFF1092at 405.425 kb on - strand, within GFF1092at 405.430 kb on + strand, within GFF1092at 405.430 kb on + strand, within GFF1092at 405.430 kb on + strand, within GFF1092at 405.430 kb on + strand, within GFF1092at 405.430 kb on + strand, within GFF1092at 405.431 kb on - strand, within GFF1092at 405.431 kb on - strand, within GFF1092at 405.431 kb on - strand, within GFF1092at 405.454 kb on + strand, within GFF1092at 405.454 kb on + strand, within GFF1092at 405.455 kb on - strand, within GFF1092at 405.455 kb on - strand, within GFF1092at 405.550 kb on + strand, within GFF1092at 405.551 kb on - strand, within GFF1092at 405.551 kb on - strand, within GFF1092at 405.679 kb on + strand, within GFF1092at 405.679 kb on + strand, within GFF1092at 405.679 kb on + strand, within GFF1092at 405.680 kb on - strand, within GFF1092at 405.715 kb on + strandat 405.716 kb on - strandat 405.716 kb on - strandat 405.716 kb on - strandat 405.799 kb on + strandat 405.799 kb on + strandat 405.799 kb on + strandat 405.799 kb on + strandat 405.799 kb on + strandat 405.799 kb on + strandat 405.799 kb on + strandat 405.799 kb on + strandat 405.799 kb on + strandat 405.800 kb on - strandat 405.800 kb on - strandat 405.800 kb on - strandat 405.800 kb on - strandat 405.800 kb on - strandat 405.805 kb on + strandat 405.805 kb on + strandat 405.805 kb on + strandat 405.805 kb on + strandat 405.805 kb on + strandat 405.806 kb on - strandat 405.806 kb on - strandat 406.111 kb on + strand, within GFF1093at 406.162 kb on + strand, within GFF1093at 406.163 kb on - strand, within GFF1093at 406.163 kb on - strand, within GFF1093at 406.183 kb on + strand, within GFF1093at 406.183 kb on + strand, within GFF1093at 406.183 kb on + strand, within GFF1093at 406.184 kb on - strand, within GFF1093at 406.184 kb on - strand, within GFF1093at 406.258 kb on - strand, within GFF1093at 406.336 kb on + strand, within GFF1093at 406.336 kb on + strand, within GFF1093at 406.337 kb on - strand, within GFF1093at 406.337 kb on - strand, within GFF1093at 406.465 kb on - strand, within GFF1093at 406.465 kb on - strand, within GFF1093at 406.570 kb on + strand, within GFF1093at 406.822 kb on + strandat 406.822 kb on + strandat 406.823 kb on - strandat 406.849 kb on - strandat 406.849 kb on - strandat 406.849 kb on - strandat 407.080 kb on + strand, within GFF1094at 407.238 kb on + strand, within GFF1094at 407.238 kb on + strand, within GFF1094at 407.238 kb on + strand, within GFF1094at 407.238 kb on + strand, within GFF1094at 407.238 kb on + strand, within GFF1094at 407.238 kb on + strand, within GFF1094at 407.239 kb on - strand, within GFF1094at 407.239 kb on - strand, within GFF1094at 407.239 kb on - strand, within GFF1094at 407.250 kb on + strand, within GFF1094at 407.251 kb on - strand, within GFF1094at 407.251 kb on - strand, within GFF1094at 407.341 kb on - strand, within GFF1094at 407.358 kb on + strand, within GFF1094at 407.481 kb on + strand, within GFF1094at 407.481 kb on + strand, within GFF1094at 407.482 kb on - strand, within GFF1094at 407.482 kb on - strand, within GFF1094at 407.701 kb on - strand, within GFF1094at 407.768 kb on + strandat 407.769 kb on - strandat 407.769 kb on - strandat 407.802 kb on + strandat 407.802 kb on + strandat 407.882 kb on + strandat 407.882 kb on + strandat 407.883 kb on - strandat 407.883 kb on - strandat 407.883 kb on - strandat 407.886 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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404,884 + GFF1092 0.11 +1.0
404,884 + GFF1092 0.11 -1.9
404,885 - GFF1092 0.11 +0.1
404,885 - GFF1092 0.11 -0.7
404,885 - GFF1092 0.11 -0.7
404,935 + GFF1092 0.16 -0.3
404,936 - GFF1092 0.16 +0.4
404,936 - GFF1092 0.16 -0.1
405,148 + GFF1092 0.36 +0.4
405,148 + GFF1092 0.36 -2.2
405,148 + GFF1092 0.36 -0.6
405,148 + GFF1092 0.36 +0.1
405,148 + GFF1092 0.36 -2.3
405,148 + GFF1092 0.36 -0.9
405,148 + GFF1092 0.36 +0.5
405,148 + GFF1092 0.36 -0.9
405,149 - GFF1092 0.36 +0.5
405,149 - GFF1092 0.36 +2.6
405,280 + GFF1092 0.49 +0.8
405,280 + GFF1092 0.49 -0.9
405,280 + GFF1092 0.49 -1.1
405,280 + GFF1092 0.49 +2.1
405,281 - GFF1092 0.49 +0.4
405,281 - GFF1092 0.49 +0.1
405,281 - GFF1092 0.49 -1.1
405,424 + GFF1092 0.63 -0.9
405,425 - GFF1092 0.63 -1.1
405,430 + GFF1092 0.63 +1.5
405,430 + GFF1092 0.63 -0.4
405,430 + GFF1092 0.63 +0.5
405,430 + GFF1092 0.63 -0.4
405,430 + GFF1092 0.63 +1.3
405,431 - GFF1092 0.64 -0.6
405,431 - GFF1092 0.64 +1.7
405,431 - GFF1092 0.64 -0.9
405,454 + GFF1092 0.66 -1.5
405,454 + GFF1092 0.66 +1.4
405,455 - GFF1092 0.66 -1.0
405,455 - GFF1092 0.66 +0.7
405,550 + GFF1092 0.75 -1.3
405,551 - GFF1092 0.75 +0.5
405,551 - GFF1092 0.75 +1.3
405,679 + GFF1092 0.88 -0.1
405,679 + GFF1092 0.88 +0.2
405,679 + GFF1092 0.88 +0.3
405,680 - GFF1092 0.88 -0.5
405,715 + -2.1
405,716 - -2.0
405,716 - -0.7
405,716 - -0.7
405,799 + -0.3
405,799 + -1.3
405,799 + +1.9
405,799 + -0.8
405,799 + -0.0
405,799 + -1.4
405,799 + -0.9
405,799 + -0.7
405,799 + -1.8
405,800 - +0.4
405,800 - -3.2
405,800 - +0.1
405,800 - -1.7
405,800 - +3.7
405,805 + -0.0
405,805 + +0.6
405,805 + +1.4
405,805 + -1.8
405,805 + +2.2
405,806 - +1.7
405,806 - +1.7
406,111 + GFF1093 0.25 +2.1
406,162 + GFF1093 0.30 -1.0
406,163 - GFF1093 0.30 -2.4
406,163 - GFF1093 0.30 -0.2
406,183 + GFF1093 0.32 -3.2
406,183 + GFF1093 0.32 -0.1
406,183 + GFF1093 0.32 +0.6
406,184 - GFF1093 0.32 +1.4
406,184 - GFF1093 0.32 +1.2
406,258 - GFF1093 0.39 -2.3
406,336 + GFF1093 0.46 -0.6
406,336 + GFF1093 0.46 +0.4
406,337 - GFF1093 0.46 -0.3
406,337 - GFF1093 0.46 +0.4
406,465 - GFF1093 0.58 +0.2
406,465 - GFF1093 0.58 +1.5
406,570 + GFF1093 0.68 -1.3
406,822 + +1.9
406,822 + +1.2
406,823 - -0.4
406,849 - -1.5
406,849 - +0.1
406,849 - +0.1
407,080 + GFF1094 0.18 +0.8
407,238 + GFF1094 0.36 +0.9
407,238 + GFF1094 0.36 -1.5
407,238 + GFF1094 0.36 -2.4
407,238 + GFF1094 0.36 -2.5
407,238 + GFF1094 0.36 +0.1
407,238 + GFF1094 0.36 +0.1
407,239 - GFF1094 0.36 -1.5
407,239 - GFF1094 0.36 +0.1
407,239 - GFF1094 0.36 +0.9
407,250 + GFF1094 0.38 -1.1
407,251 - GFF1094 0.38 +0.1
407,251 - GFF1094 0.38 -3.2
407,341 - GFF1094 0.48 +1.7
407,358 + GFF1094 0.50 -2.1
407,481 + GFF1094 0.64 -0.4
407,481 + GFF1094 0.64 +0.1
407,482 - GFF1094 0.64 -2.5
407,482 - GFF1094 0.64 -1.3
407,701 - GFF1094 0.88 +1.4
407,768 + +0.8
407,769 - -3.6
407,769 - -0.1
407,802 + -2.0
407,802 + +0.3
407,882 + +0.1
407,882 + -0.2
407,883 - -2.2
407,883 - +0.2
407,883 - +0.2
407,886 - -0.9

Or see this region's nucleotide sequence