Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1058 and GFF1059 are separated by 11 nucleotides GFF1059 and GFF1060 overlap by 4 nucleotides GFF1060 and GFF1061 overlap by 22 nucleotides GFF1061 and GFF1062 overlap by 1 nucleotides
GFF1058 - Pyrimidine ABC transporter, substrate-binding component, at 372,324 to 373,331
GFF1058
GFF1059 - Hydroxymethylpyrimidine ABC transporter, ATPase component, at 373,343 to 374,194
GFF1059
GFF1060 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 374,191 to 374,949
GFF1060
GFF1061 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 374,928 to 375,686
GFF1061
GFF1062 - Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases, at 375,686 to 376,462
GFF1062
Position (kb) 374
375 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 373.242 kb on + strand at 373.242 kb on + strand at 373.242 kb on + strand at 373.242 kb on + strand at 373.242 kb on + strand at 373.242 kb on + strand at 373.281 kb on + strand at 374.266 kb on + strand at 374.266 kb on + strand at 374.266 kb on + strand at 374.266 kb on + strand at 374.266 kb on + strand at 374.266 kb on + strand at 374.267 kb on - strand, within GFF1060 at 374.296 kb on + strand, within GFF1060 at 374.443 kb on + strand, within GFF1060 at 374.443 kb on + strand, within GFF1060 at 374.444 kb on - strand, within GFF1060 at 375.141 kb on + strand, within GFF1061 at 375.248 kb on + strand, within GFF1061 at 375.249 kb on - strand, within GFF1061 at 375.259 kb on - strand, within GFF1061 at 375.561 kb on + strand, within GFF1061 at 375.562 kb on - strand, within GFF1061 at 375.562 kb on - strand, within GFF1061 at 375.562 kb on - strand, within GFF1061 at 375.562 kb on - strand, within GFF1061 at 375.562 kb on - strand, within GFF1061 at 375.761 kb on + strand at 375.800 kb on + strand, within GFF1062 at 375.800 kb on + strand, within GFF1062 at 375.801 kb on - strand, within GFF1062 at 375.801 kb on - strand, within GFF1062
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 373,242 + -0.2 373,242 + +0.2 373,242 + +0.7 373,242 + -0.6 373,242 + +1.1 373,242 + -1.8 373,281 + -0.4 374,266 + -1.1 374,266 + -0.2 374,266 + -2.0 374,266 + -2.4 374,266 + -2.5 374,266 + -3.0 374,267 - GFF1060 0.10 -0.6 374,296 + GFF1060 0.14 -1.1 374,443 + GFF1060 0.33 -2.5 374,443 + GFF1060 0.33 -3.6 374,444 - GFF1060 0.33 -0.9 375,141 + GFF1061 0.28 -0.1 375,248 + GFF1061 0.42 +0.7 375,249 - GFF1061 0.42 -2.3 375,259 - GFF1061 0.44 -0.5 375,561 + GFF1061 0.83 -0.5 375,562 - GFF1061 0.84 -1.6 375,562 - GFF1061 0.84 -1.1 375,562 - GFF1061 0.84 +1.9 375,562 - GFF1061 0.84 +1.7 375,562 - GFF1061 0.84 -0.3 375,761 + +1.7 375,800 + GFF1062 0.15 +0.4 375,800 + GFF1062 0.15 +0.8 375,801 - GFF1062 0.15 -0.5 375,801 - GFF1062 0.15 +3.0
Or see this region's nucleotide sequence