Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1025 and GFF1026 overlap by 4 nucleotides GFF1026 and GFF1027 are separated by 86 nucleotides GFF1027 and GFF1028 are separated by 15 nucleotides GFF1028 and GFF1029 are separated by 117 nucleotides
GFF1025 - Chromate transport protein ChrA, at 341,006 to 341,605
GFF1025
GFF1026 - Probable chromate transporter protein, at 341,602 to 342,168
GFF1026
GFF1027 - Ribonuclease BN, at 342,255 to 343,178
GFF1027
GFF1028 - FIG027190: Putative transmembrane protein, at 343,194 to 343,754
GFF1028
GFF1029 - CHRD domain containing protein, at 343,872 to 344,321
GFF1029
Position (kb) 342
343
344 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 341.265 kb on + strand, within GFF1025 at 341.265 kb on + strand, within GFF1025 at 341.265 kb on + strand, within GFF1025 at 341.265 kb on + strand, within GFF1025 at 341.265 kb on + strand, within GFF1025 at 341.266 kb on - strand, within GFF1025 at 341.266 kb on - strand, within GFF1025 at 341.266 kb on - strand, within GFF1025 at 341.266 kb on - strand, within GFF1025 at 341.266 kb on - strand, within GFF1025 at 341.454 kb on - strand, within GFF1025 at 341.493 kb on + strand, within GFF1025 at 341.494 kb on - strand, within GFF1025 at 341.494 kb on - strand, within GFF1025 at 341.556 kb on + strand at 341.556 kb on + strand at 341.556 kb on + strand at 341.556 kb on + strand at 341.556 kb on + strand at 341.556 kb on + strand at 341.556 kb on + strand at 341.556 kb on + strand at 341.557 kb on - strand at 341.557 kb on - strand at 341.557 kb on - strand at 341.557 kb on - strand at 341.557 kb on - strand at 341.557 kb on - strand at 341.557 kb on - strand at 341.557 kb on - strand at 341.787 kb on + strand, within GFF1026 at 341.787 kb on + strand, within GFF1026 at 341.787 kb on + strand, within GFF1026 at 341.787 kb on + strand, within GFF1026 at 341.788 kb on - strand, within GFF1026 at 341.788 kb on - strand, within GFF1026 at 341.788 kb on - strand, within GFF1026 at 341.788 kb on - strand, within GFF1026 at 341.850 kb on - strand, within GFF1026 at 341.850 kb on - strand, within GFF1026 at 341.850 kb on - strand, within GFF1026 at 341.858 kb on + strand, within GFF1026 at 341.858 kb on + strand, within GFF1026 at 341.859 kb on - strand, within GFF1026 at 341.859 kb on - strand, within GFF1026 at 341.942 kb on + strand, within GFF1026 at 341.942 kb on + strand, within GFF1026 at 341.943 kb on - strand, within GFF1026 at 341.992 kb on + strand, within GFF1026 at 341.992 kb on + strand, within GFF1026 at 341.992 kb on + strand, within GFF1026 at 341.992 kb on + strand, within GFF1026 at 341.993 kb on - strand, within GFF1026 at 341.993 kb on - strand, within GFF1026 at 342.185 kb on - strand at 342.185 kb on - strand at 342.185 kb on - strand at 342.185 kb on - strand at 342.248 kb on + strand at 342.248 kb on + strand at 342.248 kb on + strand at 342.248 kb on + strand at 342.249 kb on - strand at 342.249 kb on - strand at 342.249 kb on - strand at 342.249 kb on - strand at 342.321 kb on + strand at 342.322 kb on - strand at 342.322 kb on - strand at 342.322 kb on - strand at 342.351 kb on + strand, within GFF1027 at 342.352 kb on - strand, within GFF1027 at 342.354 kb on + strand, within GFF1027 at 342.354 kb on + strand, within GFF1027 at 342.354 kb on + strand, within GFF1027 at 342.354 kb on + strand, within GFF1027 at 342.354 kb on + strand, within GFF1027 at 342.354 kb on + strand, within GFF1027 at 342.354 kb on + strand, within GFF1027 at 342.354 kb on + strand, within GFF1027 at 342.355 kb on - strand, within GFF1027 at 342.355 kb on - strand, within GFF1027 at 342.355 kb on - strand, within GFF1027 at 342.355 kb on - strand, within GFF1027 at 342.355 kb on - strand, within GFF1027 at 342.355 kb on - strand, within GFF1027 at 342.355 kb on - strand, within GFF1027 at 342.858 kb on + strand, within GFF1027 at 342.858 kb on + strand, within GFF1027 at 342.858 kb on + strand, within GFF1027 at 342.858 kb on + strand, within GFF1027 at 342.858 kb on + strand, within GFF1027 at 342.858 kb on + strand, within GFF1027 at 342.858 kb on + strand, within GFF1027 at 342.859 kb on - strand, within GFF1027 at 342.859 kb on - strand, within GFF1027 at 342.859 kb on - strand, within GFF1027 at 342.859 kb on - strand, within GFF1027 at 342.960 kb on + strand, within GFF1027 at 342.960 kb on + strand, within GFF1027 at 342.960 kb on + strand, within GFF1027 at 342.960 kb on + strand, within GFF1027 at 342.960 kb on + strand, within GFF1027 at 342.960 kb on + strand, within GFF1027 at 342.960 kb on + strand, within GFF1027 at 342.961 kb on - strand, within GFF1027 at 342.961 kb on - strand, within GFF1027 at 342.961 kb on - strand, within GFF1027 at 342.961 kb on - strand, within GFF1027 at 342.961 kb on - strand, within GFF1027 at 342.991 kb on - strand, within GFF1027 at 343.032 kb on + strand, within GFF1027 at 343.032 kb on + strand, within GFF1027 at 343.032 kb on + strand, within GFF1027 at 343.032 kb on + strand, within GFF1027 at 343.032 kb on + strand, within GFF1027 at 343.032 kb on + strand, within GFF1027 at 343.032 kb on + strand, within GFF1027 at 343.032 kb on + strand, within GFF1027 at 343.033 kb on - strand, within GFF1027 at 343.033 kb on - strand, within GFF1027 at 343.033 kb on - strand, within GFF1027 at 343.033 kb on - strand, within GFF1027 at 343.033 kb on - strand, within GFF1027 at 343.033 kb on - strand, within GFF1027 at 343.033 kb on - strand, within GFF1027 at 343.033 kb on - strand, within GFF1027 at 343.033 kb on - strand, within GFF1027 at 343.033 kb on - strand, within GFF1027 at 343.033 kb on - strand, within GFF1027 at 343.033 kb on - strand, within GFF1027 at 343.033 kb on - strand, within GFF1027 at 343.035 kb on + strand, within GFF1027 at 343.035 kb on + strand, within GFF1027 at 343.035 kb on + strand, within GFF1027 at 343.035 kb on + strand, within GFF1027 at 343.035 kb on + strand, within GFF1027 at 343.036 kb on - strand, within GFF1027 at 343.036 kb on - strand, within GFF1027 at 343.080 kb on + strand, within GFF1027 at 343.080 kb on + strand, within GFF1027 at 343.080 kb on + strand, within GFF1027 at 343.080 kb on + strand, within GFF1027 at 343.080 kb on + strand, within GFF1027 at 343.080 kb on + strand, within GFF1027 at 343.081 kb on - strand, within GFF1027 at 343.081 kb on - strand, within GFF1027 at 343.092 kb on + strand at 343.092 kb on + strand at 343.092 kb on + strand at 343.092 kb on + strand at 343.092 kb on + strand at 343.092 kb on + strand at 343.093 kb on - strand at 343.093 kb on - strand at 343.093 kb on - strand at 343.093 kb on - strand at 343.093 kb on - strand at 343.093 kb on - strand at 343.093 kb on - strand at 343.093 kb on - strand at 343.093 kb on - strand at 343.093 kb on - strand at 343.093 kb on - strand at 343.093 kb on - strand at 343.405 kb on + strand, within GFF1028 at 343.405 kb on + strand, within GFF1028 at 343.405 kb on + strand, within GFF1028 at 343.406 kb on - strand, within GFF1028 at 343.406 kb on - strand, within GFF1028 at 343.406 kb on - strand, within GFF1028 at 343.406 kb on - strand, within GFF1028 at 343.406 kb on - strand, within GFF1028 at 343.833 kb on + strand at 343.833 kb on + strand at 343.833 kb on + strand at 343.833 kb on + strand at 343.834 kb on - strand at 343.834 kb on - strand at 343.834 kb on - strand at 343.864 kb on + strand at 343.864 kb on + strand at 343.864 kb on + strand at 343.865 kb on - strand at 343.865 kb on - strand at 343.865 kb on - strand at 343.865 kb on - strand at 343.865 kb on - strand at 343.881 kb on + strand at 343.881 kb on + strand at 343.881 kb on + strand at 343.881 kb on + strand at 343.881 kb on + strand at 343.881 kb on + strand at 343.881 kb on + strand at 343.881 kb on + strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 344.076 kb on + strand, within GFF1029 at 344.076 kb on + strand, within GFF1029 at 344.076 kb on + strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.088 kb on + strand, within GFF1029 at 344.088 kb on + strand, within GFF1029 at 344.088 kb on + strand, within GFF1029 at 344.088 kb on + strand, within GFF1029 at 344.088 kb on + strand, within GFF1029 at 344.089 kb on - strand, within GFF1029 at 344.089 kb on - strand, within GFF1029 at 344.089 kb on - strand, within GFF1029 at 344.089 kb on - strand, within GFF1029 at 344.089 kb on - strand, within GFF1029 at 344.089 kb on - strand, within GFF1029 at 344.089 kb on - strand, within GFF1029
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 341,265 + GFF1025 0.43 -0.9 341,265 + GFF1025 0.43 -0.3 341,265 + GFF1025 0.43 +2.8 341,265 + GFF1025 0.43 -1.9 341,265 + GFF1025 0.43 -0.8 341,266 - GFF1025 0.43 -0.9 341,266 - GFF1025 0.43 -1.8 341,266 - GFF1025 0.43 -0.2 341,266 - GFF1025 0.43 +0.0 341,266 - GFF1025 0.43 -0.4 341,454 - GFF1025 0.75 -1.7 341,493 + GFF1025 0.81 -1.8 341,494 - GFF1025 0.81 -1.8 341,494 - GFF1025 0.81 -1.8 341,556 + -0.8 341,556 + -1.7 341,556 + +0.3 341,556 + +2.7 341,556 + -0.6 341,556 + -0.7 341,556 + +0.6 341,556 + +0.2 341,557 - +0.2 341,557 - -1.2 341,557 - +0.7 341,557 - +0.9 341,557 - -2.2 341,557 - -0.5 341,557 - -0.2 341,557 - +0.2 341,787 + GFF1026 0.33 +0.5 341,787 + GFF1026 0.33 -0.1 341,787 + GFF1026 0.33 +1.2 341,787 + GFF1026 0.33 -1.4 341,788 - GFF1026 0.33 -1.2 341,788 - GFF1026 0.33 -0.6 341,788 - GFF1026 0.33 -1.1 341,788 - GFF1026 0.33 -1.5 341,850 - GFF1026 0.44 -1.9 341,850 - GFF1026 0.44 +0.7 341,850 - GFF1026 0.44 -2.5 341,858 + GFF1026 0.45 +0.1 341,858 + GFF1026 0.45 -1.3 341,859 - GFF1026 0.45 +0.4 341,859 - GFF1026 0.45 +1.5 341,942 + GFF1026 0.60 +0.6 341,942 + GFF1026 0.60 -3.1 341,943 - GFF1026 0.60 -2.3 341,992 + GFF1026 0.69 +1.7 341,992 + GFF1026 0.69 -2.3 341,992 + GFF1026 0.69 +0.1 341,992 + GFF1026 0.69 +1.4 341,993 - GFF1026 0.69 -1.5 341,993 - GFF1026 0.69 +0.1 342,185 - -1.8 342,185 - -0.9 342,185 - -2.9 342,185 - -0.3 342,248 + -1.1 342,248 + -1.0 342,248 + +1.6 342,248 + +1.0 342,249 - -1.1 342,249 - -0.9 342,249 - +0.1 342,249 - -0.2 342,321 + -1.0 342,322 - -1.7 342,322 - -1.4 342,322 - +0.1 342,351 + GFF1027 0.10 +0.0 342,352 - GFF1027 0.10 -3.7 342,354 + GFF1027 0.11 -0.6 342,354 + GFF1027 0.11 +0.0 342,354 + GFF1027 0.11 +0.7 342,354 + GFF1027 0.11 +2.5 342,354 + GFF1027 0.11 +0.9 342,354 + GFF1027 0.11 -1.2 342,354 + GFF1027 0.11 +1.1 342,354 + GFF1027 0.11 -0.1 342,355 - GFF1027 0.11 -0.3 342,355 - GFF1027 0.11 +1.6 342,355 - GFF1027 0.11 +0.1 342,355 - GFF1027 0.11 -1.3 342,355 - GFF1027 0.11 -2.8 342,355 - GFF1027 0.11 +0.1 342,355 - GFF1027 0.11 -1.1 342,858 + GFF1027 0.65 -1.7 342,858 + GFF1027 0.65 +0.2 342,858 + GFF1027 0.65 -0.9 342,858 + GFF1027 0.65 +0.2 342,858 + GFF1027 0.65 +0.6 342,858 + GFF1027 0.65 -2.5 342,858 + GFF1027 0.65 +0.0 342,859 - GFF1027 0.65 -0.4 342,859 - GFF1027 0.65 +1.2 342,859 - GFF1027 0.65 +0.9 342,859 - GFF1027 0.65 +1.7 342,960 + GFF1027 0.76 +1.9 342,960 + GFF1027 0.76 -0.2 342,960 + GFF1027 0.76 -2.0 342,960 + GFF1027 0.76 +0.6 342,960 + GFF1027 0.76 +1.0 342,960 + GFF1027 0.76 -0.6 342,960 + GFF1027 0.76 -1.7 342,961 - GFF1027 0.76 -2.8 342,961 - GFF1027 0.76 +1.1 342,961 - GFF1027 0.76 -1.2 342,961 - GFF1027 0.76 +4.0 342,961 - GFF1027 0.76 +0.1 342,991 - GFF1027 0.80 +3.2 343,032 + GFF1027 0.84 +0.5 343,032 + GFF1027 0.84 +0.5 343,032 + GFF1027 0.84 -1.9 343,032 + GFF1027 0.84 +0.7 343,032 + GFF1027 0.84 +1.0 343,032 + GFF1027 0.84 -1.8 343,032 + GFF1027 0.84 -0.9 343,032 + GFF1027 0.84 -1.3 343,033 - GFF1027 0.84 -1.7 343,033 - GFF1027 0.84 -1.1 343,033 - GFF1027 0.84 -1.7 343,033 - GFF1027 0.84 -1.9 343,033 - GFF1027 0.84 -0.9 343,033 - GFF1027 0.84 -0.7 343,033 - GFF1027 0.84 -1.3 343,033 - GFF1027 0.84 -1.5 343,033 - GFF1027 0.84 +0.1 343,033 - GFF1027 0.84 -0.3 343,033 - GFF1027 0.84 -1.8 343,033 - GFF1027 0.84 -3.7 343,033 - GFF1027 0.84 -0.9 343,035 + GFF1027 0.84 -0.2 343,035 + GFF1027 0.84 +1.6 343,035 + GFF1027 0.84 -0.9 343,035 + GFF1027 0.84 +0.4 343,035 + GFF1027 0.84 -0.1 343,036 - GFF1027 0.85 +1.1 343,036 - GFF1027 0.85 -0.4 343,080 + GFF1027 0.89 -1.1 343,080 + GFF1027 0.89 -3.3 343,080 + GFF1027 0.89 +0.7 343,080 + GFF1027 0.89 -1.9 343,080 + GFF1027 0.89 -1.8 343,080 + GFF1027 0.89 -0.5 343,081 - GFF1027 0.89 -2.7 343,081 - GFF1027 0.89 -0.8 343,092 + -1.5 343,092 + +0.1 343,092 + -0.4 343,092 + -0.5 343,092 + -0.8 343,092 + -2.9 343,093 - -2.3 343,093 - -0.3 343,093 - +0.2 343,093 - -1.1 343,093 - -0.7 343,093 - -0.8 343,093 - +0.5 343,093 - -1.9 343,093 - +0.5 343,093 - -1.1 343,093 - -0.8 343,093 - -2.0 343,405 + GFF1028 0.38 +2.2 343,405 + GFF1028 0.38 +1.7 343,405 + GFF1028 0.38 -1.8 343,406 - GFF1028 0.38 +0.5 343,406 - GFF1028 0.38 -2.7 343,406 - GFF1028 0.38 +0.4 343,406 - GFF1028 0.38 +0.7 343,406 - GFF1028 0.38 +0.8 343,833 + -0.6 343,833 + -0.5 343,833 + +0.9 343,833 + -1.8 343,834 - -0.5 343,834 - -0.7 343,834 - -0.2 343,864 + +0.3 343,864 + +0.9 343,864 + -0.8 343,865 - +2.4 343,865 - -0.3 343,865 - -0.8 343,865 - +0.7 343,865 - -1.1 343,881 + -0.5 343,881 + -2.1 343,881 + -0.7 343,881 + -1.4 343,881 + -0.1 343,881 + +0.3 343,881 + -1.1 343,881 + -0.1 343,882 - -0.4 343,882 - -0.3 343,882 - -1.9 343,882 - -1.1 343,882 - +0.6 343,882 - +1.3 343,882 - -3.3 343,882 - +0.2 343,882 - +0.4 343,882 - +0.5 343,882 - -0.1 344,076 + GFF1029 0.45 +0.7 344,076 + GFF1029 0.45 -0.3 344,076 + GFF1029 0.45 -2.2 344,077 - GFF1029 0.46 -2.4 344,077 - GFF1029 0.46 -3.0 344,077 - GFF1029 0.46 -1.4 344,077 - GFF1029 0.46 -0.8 344,077 - GFF1029 0.46 -0.3 344,077 - GFF1029 0.46 +0.2 344,077 - GFF1029 0.46 -1.9 344,077 - GFF1029 0.46 -1.0 344,077 - GFF1029 0.46 +0.1 344,077 - GFF1029 0.46 -1.5 344,088 + GFF1029 0.48 -1.3 344,088 + GFF1029 0.48 +0.6 344,088 + GFF1029 0.48 +1.7 344,088 + GFF1029 0.48 -1.4 344,088 + GFF1029 0.48 -1.5 344,089 - GFF1029 0.48 -0.5 344,089 - GFF1029 0.48 -1.6 344,089 - GFF1029 0.48 -1.8 344,089 - GFF1029 0.48 +1.4 344,089 - GFF1029 0.48 -0.2 344,089 - GFF1029 0.48 +0.0 344,089 - GFF1029 0.48 -0.9
Or see this region's nucleotide sequence