Strain Fitness in Variovorax sp. SCN45 around GFF1024

Experiment: Community=guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1022 and GFF1023 are separated by 7 nucleotidesGFF1023 and GFF1024 are separated by 13 nucleotidesGFF1024 and GFF1025 are separated by 38 nucleotidesGFF1025 and GFF1026 overlap by 4 nucleotides GFF1022 - Acetyltransferase, GNAT family, at 338,974 to 339,495 GFF1022 GFF1023 - UPF0311 protein RPA1785, at 339,503 to 339,985 GFF1023 GFF1024 - Aldo/keto reductase, SCO4109 family, at 339,999 to 340,967 GFF1024 GFF1025 - Chromate transport protein ChrA, at 341,006 to 341,605 GFF1025 GFF1026 - Probable chromate transporter protein, at 341,602 to 342,168 GFF1026 Position (kb) 339 340 341Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 339.061 kb on + strand, within GFF1022at 339.061 kb on + strand, within GFF1022at 339.061 kb on + strand, within GFF1022at 339.061 kb on + strand, within GFF1022at 339.061 kb on + strand, within GFF1022at 339.061 kb on + strand, within GFF1022at 339.062 kb on - strand, within GFF1022at 339.067 kb on + strand, within GFF1022at 339.067 kb on + strand, within GFF1022at 339.067 kb on + strand, within GFF1022at 339.067 kb on + strand, within GFF1022at 339.067 kb on + strand, within GFF1022at 339.068 kb on - strand, within GFF1022at 339.181 kb on + strand, within GFF1022at 339.181 kb on + strand, within GFF1022at 339.181 kb on + strand, within GFF1022at 339.181 kb on + strand, within GFF1022at 339.182 kb on - strand, within GFF1022at 339.208 kb on + strand, within GFF1022at 339.209 kb on - strand, within GFF1022at 339.209 kb on - strand, within GFF1022at 339.209 kb on - strand, within GFF1022at 339.214 kb on + strand, within GFF1022at 339.214 kb on + strand, within GFF1022at 339.214 kb on + strand, within GFF1022at 339.214 kb on + strand, within GFF1022at 339.214 kb on + strand, within GFF1022at 339.214 kb on + strand, within GFF1022at 339.214 kb on + strand, within GFF1022at 339.214 kb on + strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.235 kb on + strand, within GFF1022at 339.235 kb on + strand, within GFF1022at 339.235 kb on + strand, within GFF1022at 339.235 kb on + strand, within GFF1022at 339.235 kb on + strand, within GFF1022at 339.236 kb on - strand, within GFF1022at 339.236 kb on - strand, within GFF1022at 339.236 kb on - strand, within GFF1022at 339.236 kb on - strand, within GFF1022at 339.236 kb on - strand, within GFF1022at 339.236 kb on - strand, within GFF1022at 339.451 kb on + strandat 339.451 kb on + strandat 339.452 kb on - strandat 339.452 kb on - strandat 339.504 kb on + strandat 339.505 kb on - strandat 339.516 kb on + strandat 339.516 kb on + strandat 339.516 kb on + strandat 339.516 kb on + strandat 339.516 kb on + strandat 339.516 kb on + strandat 339.517 kb on - strandat 339.517 kb on - strandat 339.630 kb on + strand, within GFF1023at 339.630 kb on + strand, within GFF1023at 339.630 kb on + strand, within GFF1023at 339.630 kb on + strand, within GFF1023at 339.630 kb on + strand, within GFF1023at 339.630 kb on + strand, within GFF1023at 339.630 kb on + strand, within GFF1023at 339.631 kb on - strand, within GFF1023at 339.631 kb on - strand, within GFF1023at 339.631 kb on - strand, within GFF1023at 339.631 kb on - strand, within GFF1023at 339.631 kb on - strand, within GFF1023at 339.717 kb on + strand, within GFF1023at 339.717 kb on + strand, within GFF1023at 339.717 kb on + strand, within GFF1023at 339.717 kb on + strand, within GFF1023at 339.717 kb on + strand, within GFF1023at 339.718 kb on - strand, within GFF1023at 339.718 kb on - strand, within GFF1023at 339.718 kb on - strand, within GFF1023at 339.718 kb on - strand, within GFF1023at 339.718 kb on - strand, within GFF1023at 339.718 kb on - strand, within GFF1023at 339.718 kb on - strand, within GFF1023at 339.718 kb on - strand, within GFF1023at 339.718 kb on - strand, within GFF1023at 339.750 kb on + strand, within GFF1023at 339.750 kb on + strand, within GFF1023at 339.961 kb on + strandat 339.961 kb on + strandat 339.961 kb on + strandat 339.961 kb on + strandat 339.962 kb on - strandat 340.183 kb on + strand, within GFF1024at 340.183 kb on + strand, within GFF1024at 340.183 kb on + strand, within GFF1024at 340.183 kb on + strand, within GFF1024at 340.183 kb on + strand, within GFF1024at 340.183 kb on + strand, within GFF1024at 340.183 kb on + strand, within GFF1024at 340.183 kb on + strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.184 kb on - strand, within GFF1024at 340.240 kb on + strand, within GFF1024at 340.240 kb on + strand, within GFF1024at 340.241 kb on - strand, within GFF1024at 340.241 kb on - strand, within GFF1024at 340.241 kb on - strand, within GFF1024at 340.241 kb on - strand, within GFF1024at 340.241 kb on - strand, within GFF1024at 340.297 kb on + strand, within GFF1024at 340.297 kb on + strand, within GFF1024at 340.297 kb on + strand, within GFF1024at 340.298 kb on - strand, within GFF1024at 340.298 kb on - strand, within GFF1024at 340.298 kb on - strand, within GFF1024at 340.331 kb on - strand, within GFF1024at 340.402 kb on + strand, within GFF1024at 340.403 kb on - strand, within GFF1024at 340.411 kb on + strand, within GFF1024at 340.411 kb on + strand, within GFF1024at 340.411 kb on + strand, within GFF1024at 340.411 kb on + strand, within GFF1024at 340.411 kb on + strand, within GFF1024at 340.411 kb on + strand, within GFF1024at 340.411 kb on + strand, within GFF1024at 340.411 kb on + strand, within GFF1024at 340.412 kb on - strand, within GFF1024at 340.412 kb on - strand, within GFF1024at 340.412 kb on - strand, within GFF1024at 340.412 kb on - strand, within GFF1024at 340.412 kb on - strand, within GFF1024at 340.412 kb on - strand, within GFF1024at 340.492 kb on + strand, within GFF1024at 340.492 kb on + strand, within GFF1024at 340.492 kb on + strand, within GFF1024at 340.597 kb on + strand, within GFF1024at 340.598 kb on - strand, within GFF1024at 340.598 kb on - strand, within GFF1024at 340.657 kb on + strand, within GFF1024at 340.657 kb on + strand, within GFF1024at 340.657 kb on + strand, within GFF1024at 340.657 kb on + strand, within GFF1024at 340.657 kb on + strand, within GFF1024at 340.657 kb on + strand, within GFF1024at 340.657 kb on + strand, within GFF1024at 340.657 kb on + strand, within GFF1024at 340.658 kb on - strand, within GFF1024at 340.658 kb on - strand, within GFF1024at 340.658 kb on - strand, within GFF1024at 340.658 kb on - strand, within GFF1024at 340.658 kb on - strand, within GFF1024at 340.658 kb on - strand, within GFF1024at 340.658 kb on - strand, within GFF1024at 340.658 kb on - strand, within GFF1024at 340.807 kb on + strand, within GFF1024at 340.807 kb on + strand, within GFF1024at 340.808 kb on - strand, within GFF1024at 340.808 kb on - strand, within GFF1024at 340.808 kb on - strand, within GFF1024at 341.018 kb on + strandat 341.018 kb on + strandat 341.018 kb on + strandat 341.018 kb on + strandat 341.018 kb on + strandat 341.018 kb on + strandat 341.018 kb on + strandat 341.083 kb on + strand, within GFF1025at 341.084 kb on - strand, within GFF1025at 341.084 kb on - strand, within GFF1025at 341.101 kb on + strand, within GFF1025at 341.102 kb on - strand, within GFF1025at 341.102 kb on - strand, within GFF1025at 341.265 kb on + strand, within GFF1025at 341.265 kb on + strand, within GFF1025at 341.265 kb on + strand, within GFF1025at 341.265 kb on + strand, within GFF1025at 341.265 kb on + strand, within GFF1025at 341.266 kb on - strand, within GFF1025at 341.266 kb on - strand, within GFF1025at 341.266 kb on - strand, within GFF1025at 341.266 kb on - strand, within GFF1025at 341.266 kb on - strand, within GFF1025at 341.454 kb on - strand, within GFF1025at 341.493 kb on + strand, within GFF1025at 341.494 kb on - strand, within GFF1025at 341.494 kb on - strand, within GFF1025at 341.556 kb on + strandat 341.556 kb on + strandat 341.556 kb on + strandat 341.556 kb on + strandat 341.556 kb on + strandat 341.556 kb on + strandat 341.556 kb on + strandat 341.556 kb on + strandat 341.557 kb on - strandat 341.557 kb on - strandat 341.557 kb on - strandat 341.557 kb on - strandat 341.557 kb on - strandat 341.557 kb on - strandat 341.557 kb on - strandat 341.557 kb on - strandat 341.787 kb on + strand, within GFF1026at 341.787 kb on + strand, within GFF1026at 341.787 kb on + strand, within GFF1026at 341.787 kb on + strand, within GFF1026at 341.788 kb on - strand, within GFF1026at 341.788 kb on - strand, within GFF1026at 341.788 kb on - strand, within GFF1026at 341.788 kb on - strand, within GFF1026at 341.850 kb on - strand, within GFF1026at 341.850 kb on - strand, within GFF1026at 341.850 kb on - strand, within GFF1026at 341.858 kb on + strand, within GFF1026at 341.858 kb on + strand, within GFF1026at 341.859 kb on - strand, within GFF1026at 341.859 kb on - strand, within GFF1026at 341.942 kb on + strand, within GFF1026at 341.942 kb on + strand, within GFF1026at 341.943 kb on - strand, within GFF1026

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
remove
339,061 + GFF1022 0.17 -1.3
339,061 + GFF1022 0.17 +1.1
339,061 + GFF1022 0.17 -0.7
339,061 + GFF1022 0.17 +1.4
339,061 + GFF1022 0.17 +1.3
339,061 + GFF1022 0.17 +2.0
339,062 - GFF1022 0.17 -2.2
339,067 + GFF1022 0.18 +0.1
339,067 + GFF1022 0.18 +1.7
339,067 + GFF1022 0.18 -2.0
339,067 + GFF1022 0.18 -1.4
339,067 + GFF1022 0.18 -0.3
339,068 - GFF1022 0.18 -0.4
339,181 + GFF1022 0.40 -1.7
339,181 + GFF1022 0.40 -1.6
339,181 + GFF1022 0.40 -1.5
339,181 + GFF1022 0.40 +0.4
339,182 - GFF1022 0.40 -2.6
339,208 + GFF1022 0.45 +0.3
339,209 - GFF1022 0.45 -0.3
339,209 - GFF1022 0.45 +1.7
339,209 - GFF1022 0.45 -0.1
339,214 + GFF1022 0.46 -0.1
339,214 + GFF1022 0.46 -0.5
339,214 + GFF1022 0.46 -3.1
339,214 + GFF1022 0.46 -0.9
339,214 + GFF1022 0.46 -3.0
339,214 + GFF1022 0.46 +2.8
339,214 + GFF1022 0.46 -1.5
339,214 + GFF1022 0.46 -0.3
339,215 - GFF1022 0.46 +0.8
339,215 - GFF1022 0.46 -0.0
339,215 - GFF1022 0.46 +1.7
339,215 - GFF1022 0.46 -0.8
339,215 - GFF1022 0.46 -0.7
339,215 - GFF1022 0.46 -1.2
339,215 - GFF1022 0.46 -1.3
339,215 - GFF1022 0.46 +0.2
339,215 - GFF1022 0.46 +1.4
339,215 - GFF1022 0.46 -0.0
339,215 - GFF1022 0.46 +1.0
339,215 - GFF1022 0.46 +0.4
339,215 - GFF1022 0.46 -0.9
339,235 + GFF1022 0.50 +0.3
339,235 + GFF1022 0.50 -1.9
339,235 + GFF1022 0.50 -4.5
339,235 + GFF1022 0.50 -1.7
339,235 + GFF1022 0.50 +1.1
339,236 - GFF1022 0.50 -0.7
339,236 - GFF1022 0.50 +1.2
339,236 - GFF1022 0.50 +0.6
339,236 - GFF1022 0.50 +0.3
339,236 - GFF1022 0.50 -1.7
339,236 - GFF1022 0.50 -1.5
339,451 + -2.5
339,451 + -1.2
339,452 - -0.2
339,452 - +0.0
339,504 + +0.7
339,505 - -0.7
339,516 + +1.0
339,516 + -2.9
339,516 + -2.1
339,516 + -0.8
339,516 + -1.7
339,516 + +1.8
339,517 - +0.5
339,517 - -0.2
339,630 + GFF1023 0.26 -0.8
339,630 + GFF1023 0.26 +0.0
339,630 + GFF1023 0.26 -2.0
339,630 + GFF1023 0.26 -3.4
339,630 + GFF1023 0.26 +1.7
339,630 + GFF1023 0.26 -0.3
339,630 + GFF1023 0.26 -0.1
339,631 - GFF1023 0.27 +0.8
339,631 - GFF1023 0.27 +0.7
339,631 - GFF1023 0.27 -0.9
339,631 - GFF1023 0.27 -0.4
339,631 - GFF1023 0.27 -0.7
339,717 + GFF1023 0.44 -1.1
339,717 + GFF1023 0.44 -1.1
339,717 + GFF1023 0.44 +0.4
339,717 + GFF1023 0.44 +0.3
339,717 + GFF1023 0.44 +0.1
339,718 - GFF1023 0.45 -0.0
339,718 - GFF1023 0.45 +2.9
339,718 - GFF1023 0.45 -0.9
339,718 - GFF1023 0.45 -2.1
339,718 - GFF1023 0.45 -2.6
339,718 - GFF1023 0.45 +0.9
339,718 - GFF1023 0.45 +1.3
339,718 - GFF1023 0.45 -0.4
339,718 - GFF1023 0.45 -0.7
339,750 + GFF1023 0.51 +0.0
339,750 + GFF1023 0.51 +0.7
339,961 + -2.7
339,961 + -1.4
339,961 + -0.7
339,961 + -0.0
339,962 - -0.9
340,183 + GFF1024 0.19 +1.0
340,183 + GFF1024 0.19 +1.7
340,183 + GFF1024 0.19 -2.2
340,183 + GFF1024 0.19 -1.0
340,183 + GFF1024 0.19 -0.3
340,183 + GFF1024 0.19 +0.9
340,183 + GFF1024 0.19 +0.6
340,183 + GFF1024 0.19 -0.8
340,184 - GFF1024 0.19 -1.0
340,184 - GFF1024 0.19 +1.5
340,184 - GFF1024 0.19 -0.7
340,184 - GFF1024 0.19 -2.0
340,184 - GFF1024 0.19 -1.1
340,184 - GFF1024 0.19 -2.3
340,184 - GFF1024 0.19 -2.2
340,184 - GFF1024 0.19 -1.6
340,184 - GFF1024 0.19 +0.1
340,240 + GFF1024 0.25 +1.7
340,240 + GFF1024 0.25 -1.9
340,241 - GFF1024 0.25 -2.6
340,241 - GFF1024 0.25 -1.1
340,241 - GFF1024 0.25 +2.2
340,241 - GFF1024 0.25 -0.6
340,241 - GFF1024 0.25 +0.4
340,297 + GFF1024 0.31 +0.2
340,297 + GFF1024 0.31 +0.1
340,297 + GFF1024 0.31 +1.0
340,298 - GFF1024 0.31 -1.0
340,298 - GFF1024 0.31 -3.1
340,298 - GFF1024 0.31 +0.5
340,331 - GFF1024 0.34 +0.7
340,402 + GFF1024 0.42 +3.1
340,403 - GFF1024 0.42 +0.3
340,411 + GFF1024 0.43 -0.1
340,411 + GFF1024 0.43 -0.8
340,411 + GFF1024 0.43 -0.9
340,411 + GFF1024 0.43 -0.7
340,411 + GFF1024 0.43 +0.4
340,411 + GFF1024 0.43 +1.1
340,411 + GFF1024 0.43 +0.8
340,411 + GFF1024 0.43 -0.1
340,412 - GFF1024 0.43 +1.5
340,412 - GFF1024 0.43 -1.3
340,412 - GFF1024 0.43 -0.8
340,412 - GFF1024 0.43 -0.3
340,412 - GFF1024 0.43 +2.1
340,412 - GFF1024 0.43 -0.3
340,492 + GFF1024 0.51 -1.3
340,492 + GFF1024 0.51 -0.2
340,492 + GFF1024 0.51 -0.5
340,597 + GFF1024 0.62 -1.0
340,598 - GFF1024 0.62 +0.3
340,598 - GFF1024 0.62 +1.9
340,657 + GFF1024 0.68 +0.8
340,657 + GFF1024 0.68 +2.2
340,657 + GFF1024 0.68 -0.4
340,657 + GFF1024 0.68 -0.2
340,657 + GFF1024 0.68 -1.1
340,657 + GFF1024 0.68 -0.1
340,657 + GFF1024 0.68 +0.8
340,657 + GFF1024 0.68 -0.9
340,658 - GFF1024 0.68 -0.7
340,658 - GFF1024 0.68 +0.4
340,658 - GFF1024 0.68 +0.6
340,658 - GFF1024 0.68 -0.2
340,658 - GFF1024 0.68 +0.1
340,658 - GFF1024 0.68 +0.1
340,658 - GFF1024 0.68 -1.8
340,658 - GFF1024 0.68 -0.4
340,807 + GFF1024 0.83 +0.2
340,807 + GFF1024 0.83 -0.6
340,808 - GFF1024 0.83 -2.3
340,808 - GFF1024 0.83 +0.1
340,808 - GFF1024 0.83 -0.5
341,018 + +1.4
341,018 + -3.0
341,018 + +0.7
341,018 + -1.5
341,018 + -0.0
341,018 + -3.5
341,018 + +1.1
341,083 + GFF1025 0.13 -0.7
341,084 - GFF1025 0.13 +2.1
341,084 - GFF1025 0.13 -0.3
341,101 + GFF1025 0.16 -0.3
341,102 - GFF1025 0.16 -1.1
341,102 - GFF1025 0.16 -2.9
341,265 + GFF1025 0.43 -0.9
341,265 + GFF1025 0.43 -0.3
341,265 + GFF1025 0.43 +2.8
341,265 + GFF1025 0.43 -1.9
341,265 + GFF1025 0.43 -0.8
341,266 - GFF1025 0.43 -0.9
341,266 - GFF1025 0.43 -1.8
341,266 - GFF1025 0.43 -0.2
341,266 - GFF1025 0.43 +0.0
341,266 - GFF1025 0.43 -0.4
341,454 - GFF1025 0.75 -1.7
341,493 + GFF1025 0.81 -1.8
341,494 - GFF1025 0.81 -1.8
341,494 - GFF1025 0.81 -1.8
341,556 + -0.8
341,556 + -1.7
341,556 + +0.3
341,556 + +2.7
341,556 + -0.6
341,556 + -0.7
341,556 + +0.6
341,556 + +0.2
341,557 - +0.2
341,557 - -1.2
341,557 - +0.7
341,557 - +0.9
341,557 - -2.2
341,557 - -0.5
341,557 - -0.2
341,557 - +0.2
341,787 + GFF1026 0.33 +0.5
341,787 + GFF1026 0.33 -0.1
341,787 + GFF1026 0.33 +1.2
341,787 + GFF1026 0.33 -1.4
341,788 - GFF1026 0.33 -1.2
341,788 - GFF1026 0.33 -0.6
341,788 - GFF1026 0.33 -1.1
341,788 - GFF1026 0.33 -1.5
341,850 - GFF1026 0.44 -1.9
341,850 - GFF1026 0.44 +0.7
341,850 - GFF1026 0.44 -2.5
341,858 + GFF1026 0.45 +0.1
341,858 + GFF1026 0.45 -1.3
341,859 - GFF1026 0.45 +0.4
341,859 - GFF1026 0.45 +1.5
341,942 + GFF1026 0.60 +0.6
341,942 + GFF1026 0.60 -3.1
341,943 - GFF1026 0.60 -2.3

Or see this region's nucleotide sequence