Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF988 and GFF989 are separated by 130 nucleotides GFF989 and GFF990 overlap by 4 nucleotides GFF990 and GFF991 are separated by 152 nucleotides GFF991 and GFF992 are separated by 21 nucleotides
GFF988 - LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23), at 306,603 to 307,601
GFF988
GFF989 - Segregation and condensation protein B, at 307,732 to 308,598
GFF989
GFF990 - LSU rRNA pseudouridine(2605) synthase (EC 5.4.99.22), at 308,595 to 310,394
GFF990
GFF991 - Nucleoside diphosphate kinase (EC 2.7.4.6), at 310,547 to 310,972
GFF991
GFF992 - 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192), at 310,994 to 312,142
GFF992
Position (kb) 308
309
310
311 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 307.670 kb on + strand at 307.670 kb on + strand at 307.670 kb on + strand at 307.670 kb on + strand at 307.670 kb on + strand at 307.670 kb on + strand at 307.670 kb on + strand at 307.670 kb on + strand at 307.670 kb on + strand at 307.670 kb on + strand at 307.671 kb on - strand at 307.671 kb on - strand at 308.788 kb on - strand, within GFF990 at 308.961 kb on + strand, within GFF990 at 308.961 kb on + strand, within GFF990 at 308.962 kb on - strand, within GFF990 at 308.962 kb on - strand, within GFF990 at 308.962 kb on - strand, within GFF990 at 308.962 kb on - strand, within GFF990 at 309.303 kb on + strand, within GFF990 at 309.304 kb on - strand, within GFF990 at 309.378 kb on + strand, within GFF990 at 309.378 kb on + strand, within GFF990 at 309.379 kb on - strand, within GFF990 at 309.583 kb on - strand, within GFF990 at 309.583 kb on - strand, within GFF990 at 310.266 kb on + strand at 310.266 kb on + strand at 310.266 kb on + strand at 310.266 kb on + strand at 310.266 kb on + strand at 310.266 kb on + strand at 310.267 kb on - strand at 310.267 kb on - strand at 310.267 kb on - strand at 310.267 kb on - strand at 310.267 kb on - strand at 310.480 kb on + strand at 310.480 kb on + strand at 310.961 kb on + strand at 310.961 kb on + strand at 310.961 kb on + strand at 310.962 kb on - strand at 310.978 kb on + strand at 310.978 kb on + strand at 310.978 kb on + strand at 310.978 kb on + strand at 310.978 kb on + strand at 310.978 kb on + strand at 310.978 kb on + strand at 310.979 kb on - strand at 310.979 kb on - strand at 310.979 kb on - strand at 310.979 kb on - strand at 311.274 kb on + strand, within GFF992 at 311.274 kb on + strand, within GFF992 at 311.274 kb on + strand, within GFF992 at 311.275 kb on - strand, within GFF992 at 311.275 kb on - strand, within GFF992 at 311.275 kb on - strand, within GFF992 at 311.275 kb on - strand, within GFF992
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 307,670 + -0.7 307,670 + -0.8 307,670 + +1.1 307,670 + +2.5 307,670 + -0.0 307,670 + +1.9 307,670 + -2.4 307,670 + +0.5 307,670 + +0.9 307,670 + +0.6 307,671 - +0.9 307,671 - +1.9 308,788 - GFF990 0.11 +0.9 308,961 + GFF990 0.20 -0.9 308,961 + GFF990 0.20 -2.2 308,962 - GFF990 0.20 -1.3 308,962 - GFF990 0.20 -1.5 308,962 - GFF990 0.20 -0.5 308,962 - GFF990 0.20 -0.1 309,303 + GFF990 0.39 +1.9 309,304 - GFF990 0.39 -1.3 309,378 + GFF990 0.43 -0.5 309,378 + GFF990 0.43 -1.7 309,379 - GFF990 0.44 -1.4 309,583 - GFF990 0.55 +1.5 309,583 - GFF990 0.55 -3.2 310,266 + +2.2 310,266 + -0.7 310,266 + -1.0 310,266 + -2.3 310,266 + -0.1 310,266 + -0.1 310,267 - +2.3 310,267 - -0.7 310,267 - -0.5 310,267 - -0.1 310,267 - -1.8 310,480 + -2.5 310,480 + -1.1 310,961 + -0.1 310,961 + -0.8 310,961 + -2.0 310,962 - +0.9 310,978 + -0.4 310,978 + -1.5 310,978 + -0.9 310,978 + -0.6 310,978 + -0.2 310,978 + -2.6 310,978 + +1.2 310,979 - -1.6 310,979 - -1.8 310,979 - +0.1 310,979 - -1.3 311,274 + GFF992 0.24 -0.2 311,274 + GFF992 0.24 -1.6 311,274 + GFF992 0.24 -2.8 311,275 - GFF992 0.24 -1.2 311,275 - GFF992 0.24 -1.5 311,275 - GFF992 0.24 -1.1 311,275 - GFF992 0.24 -1.6
Or see this region's nucleotide sequence