Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF941 and GFF942 overlap by 4 nucleotides GFF942 and GFF943 are separated by 19 nucleotides GFF943 and GFF944 are separated by 158 nucleotides
GFF941 - Transporter, LysE family, at 254,505 to 255,143
GFF941
GFF942 - Iron-sulfur cluster-binding protein, at 255,140 to 255,775
GFF942
GFF943 - Intracellular PHB depolymerase, at 255,795 to 257,237
GFF943
GFF944 - Aromatic-amino-acid aminotransferase (EC 2.6.1.57), at 257,396 to 258,592
GFF944
Position (kb) 255
256
257
258 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 254.874 kb on + strand, within GFF941 at 254.874 kb on + strand, within GFF941 at 254.874 kb on + strand, within GFF941 at 254.874 kb on + strand, within GFF941 at 254.874 kb on + strand, within GFF941 at 254.875 kb on - strand, within GFF941 at 254.875 kb on - strand, within GFF941 at 254.875 kb on - strand, within GFF941 at 254.875 kb on - strand, within GFF941 at 254.875 kb on - strand, within GFF941 at 254.899 kb on + strand, within GFF941 at 254.899 kb on + strand, within GFF941 at 254.899 kb on + strand, within GFF941 at 254.900 kb on - strand, within GFF941 at 254.900 kb on - strand, within GFF941 at 254.900 kb on - strand, within GFF941 at 254.900 kb on - strand, within GFF941 at 254.900 kb on - strand, within GFF941 at 254.900 kb on - strand, within GFF941 at 254.900 kb on - strand, within GFF941 at 254.919 kb on + strand, within GFF941 at 254.920 kb on - strand, within GFF941 at 254.920 kb on - strand, within GFF941 at 255.118 kb on + strand at 255.118 kb on + strand at 255.118 kb on + strand at 255.118 kb on + strand at 255.118 kb on + strand at 255.118 kb on + strand at 255.118 kb on + strand at 255.118 kb on + strand at 255.118 kb on + strand at 255.118 kb on + strand at 255.118 kb on + strand at 255.118 kb on + strand at 255.118 kb on + strand at 255.118 kb on + strand at 255.118 kb on + strand at 255.118 kb on + strand at 255.118 kb on + strand at 255.118 kb on + strand at 255.118 kb on + strand at 255.118 kb on + strand at 255.118 kb on + strand at 255.118 kb on + strand at 255.118 kb on + strand at 255.118 kb on + strand at 255.118 kb on + strand at 255.119 kb on - strand at 255.119 kb on - strand at 255.119 kb on - strand at 255.119 kb on - strand at 255.119 kb on - strand at 255.119 kb on - strand at 255.119 kb on - strand at 255.119 kb on - strand at 255.119 kb on - strand at 255.119 kb on - strand at 255.119 kb on - strand at 255.119 kb on - strand at 255.119 kb on - strand at 255.119 kb on - strand at 255.119 kb on - strand at 255.119 kb on - strand at 255.119 kb on - strand at 255.119 kb on - strand at 255.119 kb on - strand at 255.119 kb on - strand at 255.119 kb on - strand at 255.119 kb on - strand at 255.119 kb on - strand at 255.119 kb on - strand at 255.309 kb on + strand, within GFF942 at 255.310 kb on - strand, within GFF942 at 255.310 kb on - strand, within GFF942 at 255.693 kb on + strand, within GFF942 at 255.693 kb on + strand, within GFF942 at 255.693 kb on + strand, within GFF942 at 255.693 kb on + strand, within GFF942 at 255.693 kb on + strand, within GFF942 at 255.693 kb on + strand, within GFF942 at 255.693 kb on + strand, within GFF942 at 255.694 kb on - strand, within GFF942 at 255.694 kb on - strand, within GFF942 at 255.694 kb on - strand, within GFF942 at 256.015 kb on + strand, within GFF943 at 256.054 kb on + strand, within GFF943 at 256.054 kb on + strand, within GFF943 at 256.078 kb on + strand, within GFF943 at 256.079 kb on - strand, within GFF943 at 256.079 kb on - strand, within GFF943 at 256.079 kb on - strand, within GFF943 at 256.079 kb on - strand, within GFF943 at 256.079 kb on - strand, within GFF943 at 256.278 kb on + strand, within GFF943 at 256.278 kb on + strand, within GFF943 at 256.279 kb on - strand, within GFF943 at 256.279 kb on - strand, within GFF943 at 256.279 kb on - strand, within GFF943 at 256.279 kb on - strand, within GFF943 at 256.279 kb on - strand, within GFF943 at 256.300 kb on + strand, within GFF943 at 256.300 kb on + strand, within GFF943 at 256.300 kb on + strand, within GFF943 at 256.300 kb on + strand, within GFF943 at 256.300 kb on + strand, within GFF943 at 256.301 kb on - strand, within GFF943 at 256.301 kb on - strand, within GFF943 at 256.301 kb on - strand, within GFF943 at 256.301 kb on - strand, within GFF943 at 256.303 kb on + strand, within GFF943 at 256.303 kb on + strand, within GFF943 at 256.303 kb on + strand, within GFF943 at 256.303 kb on + strand, within GFF943 at 256.303 kb on + strand, within GFF943 at 256.303 kb on + strand, within GFF943 at 256.304 kb on - strand, within GFF943 at 256.304 kb on - strand, within GFF943 at 256.304 kb on - strand, within GFF943 at 256.304 kb on - strand, within GFF943 at 256.333 kb on + strand, within GFF943 at 256.333 kb on + strand, within GFF943 at 256.333 kb on + strand, within GFF943 at 256.333 kb on + strand, within GFF943 at 256.333 kb on + strand, within GFF943 at 256.333 kb on + strand, within GFF943 at 256.333 kb on + strand, within GFF943 at 256.333 kb on + strand, within GFF943 at 256.334 kb on - strand, within GFF943 at 256.342 kb on + strand, within GFF943 at 256.342 kb on + strand, within GFF943 at 256.342 kb on + strand, within GFF943 at 256.343 kb on - strand, within GFF943 at 256.343 kb on - strand, within GFF943 at 256.343 kb on - strand, within GFF943 at 256.399 kb on + strand, within GFF943 at 256.399 kb on + strand, within GFF943 at 256.400 kb on - strand, within GFF943 at 256.405 kb on + strand, within GFF943 at 256.405 kb on + strand, within GFF943 at 256.405 kb on + strand, within GFF943 at 256.405 kb on + strand, within GFF943 at 256.405 kb on + strand, within GFF943 at 256.405 kb on + strand, within GFF943 at 256.405 kb on + strand, within GFF943 at 256.406 kb on - strand, within GFF943 at 256.406 kb on - strand, within GFF943 at 256.406 kb on - strand, within GFF943 at 256.406 kb on - strand, within GFF943 at 256.406 kb on - strand, within GFF943 at 256.406 kb on - strand, within GFF943 at 256.472 kb on - strand, within GFF943 at 256.513 kb on + strand, within GFF943 at 256.513 kb on + strand, within GFF943 at 256.514 kb on - strand, within GFF943 at 256.514 kb on - strand, within GFF943 at 256.514 kb on - strand, within GFF943 at 256.714 kb on + strand, within GFF943 at 256.715 kb on - strand, within GFF943 at 256.750 kb on + strand, within GFF943 at 256.750 kb on + strand, within GFF943 at 256.750 kb on + strand, within GFF943 at 256.750 kb on + strand, within GFF943 at 256.750 kb on + strand, within GFF943 at 256.750 kb on + strand, within GFF943 at 256.750 kb on + strand, within GFF943 at 256.751 kb on - strand, within GFF943 at 256.751 kb on - strand, within GFF943 at 256.751 kb on - strand, within GFF943 at 256.751 kb on - strand, within GFF943 at 256.751 kb on - strand, within GFF943 at 256.751 kb on - strand, within GFF943 at 256.751 kb on - strand, within GFF943 at 256.759 kb on + strand, within GFF943 at 256.759 kb on + strand, within GFF943 at 256.759 kb on + strand, within GFF943 at 256.759 kb on + strand, within GFF943 at 256.759 kb on + strand, within GFF943 at 256.760 kb on - strand, within GFF943 at 256.760 kb on - strand, within GFF943 at 256.760 kb on - strand, within GFF943 at 256.760 kb on - strand, within GFF943 at 256.760 kb on - strand, within GFF943 at 256.760 kb on - strand, within GFF943 at 256.760 kb on - strand, within GFF943 at 256.760 kb on - strand, within GFF943 at 256.825 kb on + strand, within GFF943 at 256.825 kb on + strand, within GFF943 at 256.825 kb on + strand, within GFF943 at 256.825 kb on + strand, within GFF943 at 256.825 kb on + strand, within GFF943 at 256.825 kb on + strand, within GFF943 at 256.826 kb on - strand, within GFF943 at 256.826 kb on - strand, within GFF943 at 256.826 kb on - strand, within GFF943 at 256.826 kb on - strand, within GFF943 at 256.826 kb on - strand, within GFF943 at 256.826 kb on - strand, within GFF943 at 256.826 kb on - strand, within GFF943 at 256.880 kb on - strand, within GFF943 at 256.880 kb on - strand, within GFF943 at 257.071 kb on + strand, within GFF943 at 257.071 kb on + strand, within GFF943 at 257.071 kb on + strand, within GFF943 at 257.071 kb on + strand, within GFF943 at 257.072 kb on - strand, within GFF943 at 257.072 kb on - strand, within GFF943 at 257.072 kb on - strand, within GFF943 at 257.072 kb on - strand, within GFF943 at 257.072 kb on - strand, within GFF943 at 257.072 kb on - strand, within GFF943 at 257.089 kb on + strand, within GFF943 at 257.089 kb on + strand, within GFF943 at 257.089 kb on + strand, within GFF943 at 257.090 kb on - strand, within GFF943 at 257.090 kb on - strand, within GFF943 at 257.101 kb on + strand at 257.101 kb on + strand at 257.101 kb on + strand at 257.101 kb on + strand at 257.101 kb on + strand at 257.101 kb on + strand at 257.101 kb on + strand at 257.102 kb on - strand at 257.102 kb on - strand at 257.102 kb on - strand at 257.158 kb on + strand at 257.158 kb on + strand at 257.158 kb on + strand at 257.159 kb on - strand at 257.159 kb on - strand at 257.159 kb on - strand at 257.159 kb on - strand at 257.221 kb on + strand at 257.221 kb on + strand at 257.221 kb on + strand at 257.221 kb on + strand at 257.222 kb on - strand at 257.222 kb on - strand at 257.222 kb on - strand at 257.222 kb on - strand at 257.222 kb on - strand at 257.222 kb on - strand at 257.230 kb on + strand at 257.230 kb on + strand at 257.230 kb on + strand at 257.231 kb on - strand at 257.231 kb on - strand at 257.231 kb on - strand at 257.231 kb on - strand at 257.231 kb on - strand at 257.231 kb on - strand at 257.270 kb on + strand at 257.270 kb on + strand at 257.270 kb on + strand at 257.270 kb on + strand at 257.270 kb on + strand at 257.270 kb on + strand at 257.270 kb on + strand at 257.270 kb on + strand at 257.270 kb on + strand at 257.271 kb on - strand at 257.271 kb on - strand at 257.271 kb on - strand at 257.271 kb on - strand at 257.272 kb on + strand at 257.272 kb on + strand at 257.272 kb on + strand at 257.273 kb on - strand at 257.273 kb on - strand at 257.273 kb on - strand at 257.304 kb on - strand at 257.304 kb on - strand at 257.304 kb on - strand at 257.304 kb on - strand at 257.310 kb on + strand at 257.311 kb on - strand at 257.311 kb on - strand at 257.342 kb on + strand at 257.342 kb on + strand at 257.342 kb on + strand at 257.342 kb on + strand at 257.343 kb on - strand at 257.343 kb on - strand at 257.343 kb on - strand at 257.397 kb on + strand at 257.397 kb on + strand at 257.397 kb on + strand at 257.397 kb on + strand at 257.397 kb on + strand at 257.397 kb on + strand at 257.397 kb on + strand at 257.398 kb on - strand at 257.398 kb on - strand at 257.398 kb on - strand at 257.398 kb on - strand at 257.398 kb on - strand at 257.398 kb on - strand at 257.398 kb on - strand at 257.484 kb on + strand at 257.538 kb on + strand, within GFF944 at 257.539 kb on - strand, within GFF944 at 257.740 kb on - strand, within GFF944 at 258.139 kb on - strand, within GFF944 at 258.139 kb on - strand, within GFF944 at 258.142 kb on - strand, within GFF944
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 254,874 + GFF941 0.58 -1.9 254,874 + GFF941 0.58 -0.1 254,874 + GFF941 0.58 -2.0 254,874 + GFF941 0.58 -1.6 254,874 + GFF941 0.58 +0.1 254,875 - GFF941 0.58 -0.3 254,875 - GFF941 0.58 -0.4 254,875 - GFF941 0.58 -0.4 254,875 - GFF941 0.58 -0.3 254,875 - GFF941 0.58 -1.8 254,899 + GFF941 0.62 -2.1 254,899 + GFF941 0.62 +0.3 254,899 + GFF941 0.62 -1.6 254,900 - GFF941 0.62 -0.5 254,900 - GFF941 0.62 -1.1 254,900 - GFF941 0.62 -0.1 254,900 - GFF941 0.62 -0.7 254,900 - GFF941 0.62 +0.4 254,900 - GFF941 0.62 +2.6 254,900 - GFF941 0.62 -1.3 254,919 + GFF941 0.65 +1.0 254,920 - GFF941 0.65 +1.2 254,920 - GFF941 0.65 +0.5 255,118 + -1.4 255,118 + +0.9 255,118 + -0.4 255,118 + -0.8 255,118 + +1.0 255,118 + -1.2 255,118 + -1.4 255,118 + +0.1 255,118 + -0.9 255,118 + +1.2 255,118 + +0.5 255,118 + -3.0 255,118 + -1.9 255,118 + +0.4 255,118 + -1.7 255,118 + +0.2 255,118 + +0.9 255,118 + +1.4 255,118 + -2.9 255,118 + -1.6 255,118 + -1.7 255,118 + -0.5 255,118 + -2.6 255,118 + -3.2 255,118 + -3.0 255,119 - +0.2 255,119 - -2.3 255,119 - -0.2 255,119 - -0.9 255,119 - -0.1 255,119 - +0.3 255,119 - -0.7 255,119 - +0.6 255,119 - -1.2 255,119 - -1.4 255,119 - -0.0 255,119 - +0.9 255,119 - -1.2 255,119 - -1.6 255,119 - -0.2 255,119 - +0.5 255,119 - -0.6 255,119 - -1.5 255,119 - -1.5 255,119 - -1.7 255,119 - +1.4 255,119 - -2.0 255,119 - -0.2 255,119 - -0.7 255,309 + GFF942 0.27 -0.3 255,310 - GFF942 0.27 -1.1 255,310 - GFF942 0.27 -1.0 255,693 + GFF942 0.87 -1.3 255,693 + GFF942 0.87 -2.2 255,693 + GFF942 0.87 +1.1 255,693 + GFF942 0.87 -2.0 255,693 + GFF942 0.87 +0.7 255,693 + GFF942 0.87 -0.5 255,693 + GFF942 0.87 -1.7 255,694 - GFF942 0.87 -1.9 255,694 - GFF942 0.87 +0.0 255,694 - GFF942 0.87 +1.9 256,015 + GFF943 0.15 -0.7 256,054 + GFF943 0.18 -0.4 256,054 + GFF943 0.18 -1.8 256,078 + GFF943 0.20 -0.4 256,079 - GFF943 0.20 -2.2 256,079 - GFF943 0.20 -1.4 256,079 - GFF943 0.20 -1.9 256,079 - GFF943 0.20 -0.2 256,079 - GFF943 0.20 -1.9 256,278 + GFF943 0.33 +3.3 256,278 + GFF943 0.33 +0.0 256,279 - GFF943 0.34 -1.0 256,279 - GFF943 0.34 -2.4 256,279 - GFF943 0.34 -1.0 256,279 - GFF943 0.34 +0.4 256,279 - GFF943 0.34 -2.8 256,300 + GFF943 0.35 -1.8 256,300 + GFF943 0.35 -1.5 256,300 + GFF943 0.35 -1.4 256,300 + GFF943 0.35 -1.1 256,300 + GFF943 0.35 +0.0 256,301 - GFF943 0.35 -2.9 256,301 - GFF943 0.35 -0.5 256,301 - GFF943 0.35 +1.9 256,301 - GFF943 0.35 -1.7 256,303 + GFF943 0.35 -0.2 256,303 + GFF943 0.35 -0.2 256,303 + GFF943 0.35 +1.7 256,303 + GFF943 0.35 -1.1 256,303 + GFF943 0.35 -0.1 256,303 + GFF943 0.35 -0.7 256,304 - GFF943 0.35 -1.0 256,304 - GFF943 0.35 -1.2 256,304 - GFF943 0.35 +0.3 256,304 - GFF943 0.35 -1.8 256,333 + GFF943 0.37 -0.9 256,333 + GFF943 0.37 -0.1 256,333 + GFF943 0.37 +0.6 256,333 + GFF943 0.37 +1.9 256,333 + GFF943 0.37 -3.5 256,333 + GFF943 0.37 -0.8 256,333 + GFF943 0.37 -1.4 256,333 + GFF943 0.37 -2.5 256,334 - GFF943 0.37 +0.7 256,342 + GFF943 0.38 -2.4 256,342 + GFF943 0.38 -0.0 256,342 + GFF943 0.38 -1.1 256,343 - GFF943 0.38 -1.3 256,343 - GFF943 0.38 -2.3 256,343 - GFF943 0.38 -3.7 256,399 + GFF943 0.42 -0.9 256,399 + GFF943 0.42 +1.5 256,400 - GFF943 0.42 -1.8 256,405 + GFF943 0.42 +1.9 256,405 + GFF943 0.42 -0.2 256,405 + GFF943 0.42 +0.3 256,405 + GFF943 0.42 -1.2 256,405 + GFF943 0.42 -2.0 256,405 + GFF943 0.42 +0.3 256,405 + GFF943 0.42 -0.2 256,406 - GFF943 0.42 -1.7 256,406 - GFF943 0.42 -0.8 256,406 - GFF943 0.42 +0.3 256,406 - GFF943 0.42 -1.3 256,406 - GFF943 0.42 -0.4 256,406 - GFF943 0.42 +2.4 256,472 - GFF943 0.47 -0.3 256,513 + GFF943 0.50 -0.2 256,513 + GFF943 0.50 -1.6 256,514 - GFF943 0.50 -1.1 256,514 - GFF943 0.50 -0.4 256,514 - GFF943 0.50 +0.0 256,714 + GFF943 0.64 -1.1 256,715 - GFF943 0.64 -0.5 256,750 + GFF943 0.66 -1.7 256,750 + GFF943 0.66 -0.4 256,750 + GFF943 0.66 -2.3 256,750 + GFF943 0.66 +0.9 256,750 + GFF943 0.66 -2.0 256,750 + GFF943 0.66 +0.9 256,750 + GFF943 0.66 -1.0 256,751 - GFF943 0.66 -1.3 256,751 - GFF943 0.66 -0.1 256,751 - GFF943 0.66 +0.2 256,751 - GFF943 0.66 -2.1 256,751 - GFF943 0.66 -0.9 256,751 - GFF943 0.66 +0.6 256,751 - GFF943 0.66 -0.1 256,759 + GFF943 0.67 -1.1 256,759 + GFF943 0.67 -2.3 256,759 + GFF943 0.67 -1.4 256,759 + GFF943 0.67 -0.5 256,759 + GFF943 0.67 -2.2 256,760 - GFF943 0.67 +1.0 256,760 - GFF943 0.67 -1.1 256,760 - GFF943 0.67 -1.7 256,760 - GFF943 0.67 -0.1 256,760 - GFF943 0.67 -0.4 256,760 - GFF943 0.67 +0.1 256,760 - GFF943 0.67 +0.2 256,760 - GFF943 0.67 -0.6 256,825 + GFF943 0.71 -0.7 256,825 + GFF943 0.71 -0.4 256,825 + GFF943 0.71 +0.5 256,825 + GFF943 0.71 +0.5 256,825 + GFF943 0.71 -1.4 256,825 + GFF943 0.71 +1.9 256,826 - GFF943 0.71 -1.0 256,826 - GFF943 0.71 -2.9 256,826 - GFF943 0.71 +0.1 256,826 - GFF943 0.71 -1.8 256,826 - GFF943 0.71 -1.1 256,826 - GFF943 0.71 -0.6 256,826 - GFF943 0.71 -2.1 256,880 - GFF943 0.75 -1.5 256,880 - GFF943 0.75 +0.0 257,071 + GFF943 0.88 +1.1 257,071 + GFF943 0.88 -0.3 257,071 + GFF943 0.88 +0.3 257,071 + GFF943 0.88 -1.8 257,072 - GFF943 0.88 -1.8 257,072 - GFF943 0.88 -2.1 257,072 - GFF943 0.88 -2.3 257,072 - GFF943 0.88 -1.4 257,072 - GFF943 0.88 +0.6 257,072 - GFF943 0.88 -1.6 257,089 + GFF943 0.90 +0.3 257,089 + GFF943 0.90 -2.4 257,089 + GFF943 0.90 +0.9 257,090 - GFF943 0.90 -3.1 257,090 - GFF943 0.90 -2.1 257,101 + -1.3 257,101 + -1.7 257,101 + -1.5 257,101 + -1.4 257,101 + -0.4 257,101 + -0.2 257,101 + -3.1 257,102 - +0.2 257,102 - -3.6 257,102 - -0.4 257,158 + -0.4 257,158 + -3.5 257,158 + +0.5 257,159 - -1.2 257,159 - -1.3 257,159 - -3.0 257,159 - +0.3 257,221 + -1.4 257,221 + -1.0 257,221 + -1.8 257,221 + -1.0 257,222 - -2.1 257,222 - -0.1 257,222 - -0.1 257,222 - +2.3 257,222 - -0.7 257,222 - -1.2 257,230 + -0.9 257,230 + +0.3 257,230 + +0.2 257,231 - -2.2 257,231 - -0.7 257,231 - -0.1 257,231 - -0.6 257,231 - -0.3 257,231 - +0.3 257,270 + +3.0 257,270 + -1.3 257,270 + -1.2 257,270 + +1.4 257,270 + +0.3 257,270 + -2.4 257,270 + -2.4 257,270 + +1.6 257,270 + -1.2 257,271 - -0.4 257,271 - -0.2 257,271 - -1.6 257,271 - -1.7 257,272 + -1.5 257,272 + +0.5 257,272 + -0.6 257,273 - +0.3 257,273 - -0.4 257,273 - -0.1 257,304 - -1.7 257,304 - -2.4 257,304 - -0.7 257,304 - -0.1 257,310 + -0.7 257,311 - -0.1 257,311 - -1.4 257,342 + -2.6 257,342 + -0.7 257,342 + -2.5 257,342 + -0.9 257,343 - +0.7 257,343 - +0.8 257,343 - -0.6 257,397 + -0.4 257,397 + -2.6 257,397 + -1.8 257,397 + +1.2 257,397 + -2.2 257,397 + -0.8 257,397 + -0.2 257,398 - -0.2 257,398 - -4.0 257,398 - +1.0 257,398 - -2.6 257,398 - -2.4 257,398 - +2.9 257,398 - -0.1 257,484 + -0.9 257,538 + GFF944 0.12 +0.9 257,539 - GFF944 0.12 -1.3 257,740 - GFF944 0.29 -1.8 258,139 - GFF944 0.62 -0.9 258,139 - GFF944 0.62 -0.7 258,142 - GFF944 0.62 -0.9
Or see this region's nucleotide sequence