Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF896 and GFF897 are separated by 34 nucleotides GFF897 and GFF898 are separated by 7 nucleotides
GFF896 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 206,491 to 207,282
GFF896
GFF897 - putative oxygenase subunit, at 207,317 to 208,558
GFF897
GFF898 - putative oxygenase subunit, at 208,566 to 210,299
GFF898
Position (kb) 207
208
209 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 206.324 kb on - strand at 206.431 kb on - strand at 206.431 kb on - strand at 206.431 kb on - strand at 206.435 kb on + strand at 206.435 kb on + strand at 206.435 kb on + strand at 206.435 kb on + strand at 206.435 kb on + strand at 206.435 kb on + strand at 206.435 kb on + strand at 206.435 kb on + strand at 206.435 kb on + strand at 206.435 kb on + strand at 206.435 kb on + strand at 206.435 kb on + strand at 206.436 kb on - strand at 206.436 kb on - strand at 206.436 kb on - strand at 206.436 kb on - strand at 206.436 kb on - strand at 206.436 kb on - strand at 206.436 kb on - strand at 206.436 kb on - strand at 206.436 kb on - strand at 206.436 kb on - strand at 206.436 kb on - strand at 206.546 kb on + strand at 206.546 kb on + strand at 206.546 kb on + strand at 206.547 kb on - strand at 206.547 kb on - strand at 206.547 kb on - strand at 206.547 kb on - strand at 206.547 kb on - strand at 206.764 kb on + strand, within GFF896 at 206.764 kb on + strand, within GFF896 at 206.764 kb on + strand, within GFF896 at 206.764 kb on + strand, within GFF896 at 206.765 kb on - strand, within GFF896 at 206.765 kb on - strand, within GFF896 at 206.765 kb on - strand, within GFF896 at 206.765 kb on - strand, within GFF896 at 206.765 kb on - strand, within GFF896 at 206.765 kb on - strand, within GFF896 at 206.765 kb on - strand, within GFF896 at 206.944 kb on + strand, within GFF896 at 207.208 kb on + strand at 207.280 kb on + strand at 207.280 kb on + strand at 207.281 kb on - strand at 207.281 kb on - strand at 207.429 kb on + strand at 207.429 kb on + strand at 207.429 kb on + strand at 207.429 kb on + strand at 207.429 kb on + strand at 207.429 kb on + strand at 207.429 kb on + strand at 207.430 kb on - strand at 207.430 kb on - strand at 207.430 kb on - strand at 207.430 kb on - strand at 207.842 kb on + strand, within GFF897 at 207.842 kb on + strand, within GFF897 at 207.842 kb on + strand, within GFF897 at 207.843 kb on - strand, within GFF897 at 207.914 kb on + strand, within GFF897 at 207.915 kb on - strand, within GFF897 at 208.265 kb on + strand, within GFF897 at 208.349 kb on + strand, within GFF897 at 208.526 kb on + strand at 208.527 kb on - strand at 208.527 kb on - strand at 208.656 kb on + strand at 209.088 kb on + strand, within GFF898 at 209.088 kb on + strand, within GFF898 at 209.089 kb on - strand, within GFF898 at 209.089 kb on - strand, within GFF898 at 209.089 kb on - strand, within GFF898 at 209.161 kb on - strand, within GFF898 at 209.511 kb on + strand, within GFF898 at 209.511 kb on + strand, within GFF898 at 209.511 kb on + strand, within GFF898 at 209.511 kb on + strand, within GFF898
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 206,324 - +1.0 206,431 - +2.2 206,431 - -0.4 206,431 - -0.1 206,435 + -1.0 206,435 + -2.0 206,435 + -0.7 206,435 + -1.1 206,435 + +0.3 206,435 + -1.4 206,435 + -0.9 206,435 + +0.3 206,435 + -0.3 206,435 + +2.9 206,435 + -2.8 206,435 + +1.5 206,436 - +1.0 206,436 - -0.3 206,436 - -1.0 206,436 - -0.7 206,436 - +2.1 206,436 - -2.3 206,436 - +0.9 206,436 - +0.2 206,436 - -0.9 206,436 - -0.6 206,436 - +0.2 206,546 + -0.1 206,546 + -0.1 206,546 + -0.9 206,547 - +0.8 206,547 - +0.3 206,547 - -1.3 206,547 - -1.7 206,547 - -0.3 206,764 + GFF896 0.34 -1.3 206,764 + GFF896 0.34 -2.0 206,764 + GFF896 0.34 +0.8 206,764 + GFF896 0.34 +1.2 206,765 - GFF896 0.35 -1.2 206,765 - GFF896 0.35 -2.8 206,765 - GFF896 0.35 -1.3 206,765 - GFF896 0.35 +1.3 206,765 - GFF896 0.35 +1.3 206,765 - GFF896 0.35 -0.5 206,765 - GFF896 0.35 -2.0 206,944 + GFF896 0.57 -0.7 207,208 + -1.8 207,280 + -2.1 207,280 + -3.0 207,281 - -0.7 207,281 - -2.3 207,429 + +0.3 207,429 + +3.2 207,429 + +1.2 207,429 + -3.1 207,429 + -0.7 207,429 + -2.4 207,429 + -0.1 207,430 - +2.4 207,430 - -1.7 207,430 - +1.6 207,430 - -0.7 207,842 + GFF897 0.42 -3.3 207,842 + GFF897 0.42 -1.0 207,842 + GFF897 0.42 +1.9 207,843 - GFF897 0.42 -0.4 207,914 + GFF897 0.48 -0.2 207,915 - GFF897 0.48 +0.9 208,265 + GFF897 0.76 +0.3 208,349 + GFF897 0.83 +0.6 208,526 + -1.5 208,527 - +1.1 208,527 - -0.3 208,656 + +1.1 209,088 + GFF898 0.30 -0.3 209,088 + GFF898 0.30 +0.5 209,089 - GFF898 0.30 +1.6 209,089 - GFF898 0.30 -2.3 209,089 - GFF898 0.30 -0.7 209,161 - GFF898 0.34 +3.5 209,511 + GFF898 0.54 -1.8 209,511 + GFF898 0.54 -1.4 209,511 + GFF898 0.54 +0.9 209,511 + GFF898 0.54 +0.2
Or see this region's nucleotide sequence