Strain Fitness in Variovorax sp. SCN45 around GFF896

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF895 and GFF896 are separated by 183 nucleotidesGFF896 and GFF897 are separated by 34 nucleotides GFF895 - Putative transcriptional regulatory protein, at 205,270 to 206,307 GFF895 GFF896 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 206,491 to 207,282 GFF896 GFF897 - putative oxygenase subunit, at 207,317 to 208,558 GFF897 Position (kb) 206 207 208Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 205.706 kb on + strand, within GFF895at 205.707 kb on - strand, within GFF895at 205.782 kb on - strand, within GFF895at 206.106 kb on - strand, within GFF895at 206.106 kb on - strand, within GFF895at 206.106 kb on - strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.265 kb on - strandat 206.324 kb on - strandat 206.431 kb on - strandat 206.431 kb on - strandat 206.431 kb on - strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.546 kb on + strandat 206.546 kb on + strandat 206.546 kb on + strandat 206.547 kb on - strandat 206.547 kb on - strandat 206.547 kb on - strandat 206.547 kb on - strandat 206.547 kb on - strandat 206.764 kb on + strand, within GFF896at 206.764 kb on + strand, within GFF896at 206.764 kb on + strand, within GFF896at 206.764 kb on + strand, within GFF896at 206.765 kb on - strand, within GFF896at 206.765 kb on - strand, within GFF896at 206.765 kb on - strand, within GFF896at 206.765 kb on - strand, within GFF896at 206.765 kb on - strand, within GFF896at 206.765 kb on - strand, within GFF896at 206.765 kb on - strand, within GFF896at 206.944 kb on + strand, within GFF896at 207.208 kb on + strandat 207.280 kb on + strandat 207.280 kb on + strandat 207.281 kb on - strandat 207.281 kb on - strandat 207.429 kb on + strandat 207.429 kb on + strandat 207.429 kb on + strandat 207.429 kb on + strandat 207.429 kb on + strandat 207.429 kb on + strandat 207.429 kb on + strandat 207.430 kb on - strandat 207.430 kb on - strandat 207.430 kb on - strandat 207.430 kb on - strandat 207.842 kb on + strand, within GFF897at 207.842 kb on + strand, within GFF897at 207.842 kb on + strand, within GFF897at 207.843 kb on - strand, within GFF897at 207.914 kb on + strand, within GFF897at 207.915 kb on - strand, within GFF897at 208.265 kb on + strand, within GFF897

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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205,706 + GFF895 0.42 +1.0
205,707 - GFF895 0.42 +0.8
205,782 - GFF895 0.49 -0.7
206,106 - GFF895 0.81 -1.8
206,106 - GFF895 0.81 +0.9
206,106 - GFF895 0.81 -0.6
206,114 + GFF895 0.81 +0.8
206,114 + GFF895 0.81 +0.6
206,114 + GFF895 0.81 -0.7
206,114 + GFF895 0.81 -1.7
206,114 + GFF895 0.81 -1.6
206,114 + GFF895 0.81 -0.1
206,114 + GFF895 0.81 +0.5
206,114 + GFF895 0.81 -0.2
206,114 + GFF895 0.81 +0.9
206,115 - GFF895 0.81 -0.8
206,115 - GFF895 0.81 -2.0
206,115 - GFF895 0.81 -0.1
206,115 - GFF895 0.81 -0.2
206,115 - GFF895 0.81 +1.7
206,115 - GFF895 0.81 +0.5
206,115 - GFF895 0.81 +1.0
206,115 - GFF895 0.81 +0.8
206,115 - GFF895 0.81 -0.4
206,115 - GFF895 0.81 +0.5
206,115 - GFF895 0.81 -1.9
206,265 - -1.1
206,324 - +1.0
206,431 - +2.2
206,431 - -0.4
206,431 - -0.1
206,435 + -1.0
206,435 + -2.0
206,435 + -0.7
206,435 + -1.1
206,435 + +0.3
206,435 + -1.4
206,435 + -0.9
206,435 + +0.3
206,435 + -0.3
206,435 + +2.9
206,435 + -2.8
206,435 + +1.5
206,436 - +1.0
206,436 - -0.3
206,436 - -1.0
206,436 - -0.7
206,436 - +2.1
206,436 - -2.3
206,436 - +0.9
206,436 - +0.2
206,436 - -0.9
206,436 - -0.6
206,436 - +0.2
206,546 + -0.1
206,546 + -0.1
206,546 + -0.9
206,547 - +0.8
206,547 - +0.3
206,547 - -1.3
206,547 - -1.7
206,547 - -0.3
206,764 + GFF896 0.34 -1.3
206,764 + GFF896 0.34 -2.0
206,764 + GFF896 0.34 +0.8
206,764 + GFF896 0.34 +1.2
206,765 - GFF896 0.35 -1.2
206,765 - GFF896 0.35 -2.8
206,765 - GFF896 0.35 -1.3
206,765 - GFF896 0.35 +1.3
206,765 - GFF896 0.35 +1.3
206,765 - GFF896 0.35 -0.5
206,765 - GFF896 0.35 -2.0
206,944 + GFF896 0.57 -0.7
207,208 + -1.8
207,280 + -2.1
207,280 + -3.0
207,281 - -0.7
207,281 - -2.3
207,429 + +0.3
207,429 + +3.2
207,429 + +1.2
207,429 + -3.1
207,429 + -0.7
207,429 + -2.4
207,429 + -0.1
207,430 - +2.4
207,430 - -1.7
207,430 - +1.6
207,430 - -0.7
207,842 + GFF897 0.42 -3.3
207,842 + GFF897 0.42 -1.0
207,842 + GFF897 0.42 +1.9
207,843 - GFF897 0.42 -0.4
207,914 + GFF897 0.48 -0.2
207,915 - GFF897 0.48 +0.9
208,265 + GFF897 0.76 +0.3

Or see this region's nucleotide sequence