Strain Fitness in Variovorax sp. SCN45 around GFF893

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF890 and GFF891 are separated by 319 nucleotidesGFF891 and GFF892 are separated by 12 nucleotidesGFF892 and GFF893 overlap by 8 nucleotidesGFF893 and GFF894 are separated by 34 nucleotidesGFF894 and GFF895 are separated by 78 nucleotides GFF890 - Two-component system sensor histidine kinase, at 200,254 to 202,221 GFF890 GFF891 - Gfa-like protein, at 202,541 to 202,843 GFF891 GFF892 - FIG016502: iron uptake protein, at 202,856 to 203,179 GFF892 GFF893 - FIG138928: iron-regulated membrane protein, at 203,172 to 204,857 GFF893 GFF894 - FIG024006: iron uptake protein, at 204,892 to 205,191 GFF894 GFF895 - Putative transcriptional regulatory protein, at 205,270 to 206,307 GFF895 Position (kb) 203 204 205Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 202.213 kb on + strandat 202.221 kb on + strandat 202.221 kb on + strandat 202.221 kb on + strandat 202.222 kb on - strandat 202.222 kb on - strandat 202.222 kb on - strandat 202.222 kb on - strandat 202.312 kb on + strandat 202.312 kb on + strandat 202.312 kb on + strandat 202.312 kb on + strandat 202.312 kb on + strandat 202.312 kb on + strandat 202.312 kb on + strandat 202.313 kb on - strandat 202.313 kb on - strandat 202.352 kb on + strandat 202.353 kb on - strandat 202.365 kb on + strandat 202.366 kb on - strandat 202.366 kb on - strandat 202.366 kb on - strandat 202.438 kb on + strandat 202.494 kb on - strandat 202.494 kb on - strandat 202.494 kb on - strandat 202.577 kb on + strand, within GFF891at 202.577 kb on + strand, within GFF891at 202.577 kb on + strand, within GFF891at 202.577 kb on + strand, within GFF891at 202.578 kb on - strand, within GFF891at 202.578 kb on - strand, within GFF891at 202.578 kb on - strand, within GFF891at 202.578 kb on - strand, within GFF891at 202.731 kb on + strand, within GFF891at 203.515 kb on + strand, within GFF893at 203.515 kb on + strand, within GFF893at 203.515 kb on + strand, within GFF893at 203.515 kb on + strand, within GFF893at 203.515 kb on + strand, within GFF893at 203.515 kb on + strand, within GFF893at 203.516 kb on - strand, within GFF893at 203.740 kb on + strand, within GFF893at 203.740 kb on + strand, within GFF893at 203.740 kb on + strand, within GFF893at 203.741 kb on - strand, within GFF893at 203.741 kb on - strand, within GFF893at 203.741 kb on - strand, within GFF893at 203.741 kb on - strand, within GFF893at 203.911 kb on + strand, within GFF893at 203.912 kb on - strand, within GFF893at 203.912 kb on - strand, within GFF893at 203.923 kb on + strand, within GFF893at 203.923 kb on + strand, within GFF893at 203.923 kb on + strand, within GFF893at 203.923 kb on + strand, within GFF893at 203.923 kb on + strand, within GFF893at 203.924 kb on - strand, within GFF893at 203.924 kb on - strand, within GFF893at 203.924 kb on - strand, within GFF893at 203.924 kb on - strand, within GFF893at 203.924 kb on - strand, within GFF893at 203.924 kb on - strand, within GFF893at 203.924 kb on - strand, within GFF893at 204.142 kb on + strand, within GFF893at 204.142 kb on + strand, within GFF893at 204.142 kb on + strand, within GFF893at 204.142 kb on + strand, within GFF893at 204.143 kb on - strand, within GFF893at 204.143 kb on - strand, within GFF893at 204.355 kb on + strand, within GFF893at 204.356 kb on - strand, within GFF893at 204.356 kb on - strand, within GFF893at 204.356 kb on - strand, within GFF893at 204.388 kb on + strand, within GFF893at 204.388 kb on + strand, within GFF893at 204.389 kb on - strand, within GFF893at 204.389 kb on - strand, within GFF893at 204.517 kb on + strand, within GFF893at 204.517 kb on + strand, within GFF893at 204.517 kb on + strand, within GFF893at 204.518 kb on - strand, within GFF893at 204.560 kb on - strand, within GFF893at 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.819 kb on - strandat 204.819 kb on - strandat 204.819 kb on - strandat 204.819 kb on - strandat 204.819 kb on - strandat 204.819 kb on - strandat 204.819 kb on - strandat 204.819 kb on - strandat 204.819 kb on - strandat 205.034 kb on + strand, within GFF894at 205.034 kb on + strand, within GFF894at 205.035 kb on - strand, within GFF894at 205.035 kb on - strand, within GFF894at 205.035 kb on - strand, within GFF894at 205.122 kb on - strand, within GFF894at 205.122 kb on - strand, within GFF894at 205.122 kb on - strand, within GFF894at 205.258 kb on + strandat 205.265 kb on + strandat 205.265 kb on + strandat 205.266 kb on - strandat 205.277 kb on - strandat 205.382 kb on + strand, within GFF895at 205.706 kb on + strand, within GFF895at 205.707 kb on - strand, within GFF895at 205.782 kb on - strand, within GFF895

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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202,213 + -0.1
202,221 + +0.3
202,221 + -0.3
202,221 + +0.7
202,222 - -1.7
202,222 - -0.4
202,222 - -2.3
202,222 - -0.0
202,312 + +2.0
202,312 + -0.0
202,312 + -2.8
202,312 + -1.4
202,312 + +0.1
202,312 + +0.8
202,312 + -2.3
202,313 - -2.6
202,313 - -0.3
202,352 + -0.7
202,353 - +0.3
202,365 + -0.4
202,366 - +0.0
202,366 - -0.3
202,366 - +1.7
202,438 + +0.7
202,494 - +0.0
202,494 - -0.9
202,494 - +0.3
202,577 + GFF891 0.12 -3.1
202,577 + GFF891 0.12 -1.3
202,577 + GFF891 0.12 -1.3
202,577 + GFF891 0.12 -2.1
202,578 - GFF891 0.12 -0.7
202,578 - GFF891 0.12 +1.5
202,578 - GFF891 0.12 +1.0
202,578 - GFF891 0.12 -0.1
202,731 + GFF891 0.63 -1.3
203,515 + GFF893 0.20 -2.9
203,515 + GFF893 0.20 -1.7
203,515 + GFF893 0.20 -1.3
203,515 + GFF893 0.20 +0.2
203,515 + GFF893 0.20 -0.0
203,515 + GFF893 0.20 +1.4
203,516 - GFF893 0.20 +0.9
203,740 + GFF893 0.34 -1.0
203,740 + GFF893 0.34 +0.2
203,740 + GFF893 0.34 +0.8
203,741 - GFF893 0.34 -2.7
203,741 - GFF893 0.34 -2.1
203,741 - GFF893 0.34 -1.4
203,741 - GFF893 0.34 -0.8
203,911 + GFF893 0.44 -1.3
203,912 - GFF893 0.44 +0.0
203,912 - GFF893 0.44 -2.2
203,923 + GFF893 0.45 -1.1
203,923 + GFF893 0.45 -0.8
203,923 + GFF893 0.45 -0.4
203,923 + GFF893 0.45 -0.7
203,923 + GFF893 0.45 -0.7
203,924 - GFF893 0.45 -1.9
203,924 - GFF893 0.45 -2.0
203,924 - GFF893 0.45 +0.6
203,924 - GFF893 0.45 -0.4
203,924 - GFF893 0.45 +0.2
203,924 - GFF893 0.45 -0.5
203,924 - GFF893 0.45 -2.0
204,142 + GFF893 0.58 +1.6
204,142 + GFF893 0.58 -0.5
204,142 + GFF893 0.58 -1.8
204,142 + GFF893 0.58 -2.7
204,143 - GFF893 0.58 +1.0
204,143 - GFF893 0.58 +0.6
204,355 + GFF893 0.70 +1.2
204,356 - GFF893 0.70 +1.3
204,356 - GFF893 0.70 -1.3
204,356 - GFF893 0.70 +0.6
204,388 + GFF893 0.72 +0.3
204,388 + GFF893 0.72 -0.3
204,389 - GFF893 0.72 -3.0
204,389 - GFF893 0.72 -0.1
204,517 + GFF893 0.80 -0.7
204,517 + GFF893 0.80 -3.0
204,517 + GFF893 0.80 -0.1
204,518 - GFF893 0.80 +0.3
204,560 - GFF893 0.82 -0.5
204,818 + -0.2
204,818 + +4.0
204,818 + +0.8
204,818 + +0.4
204,818 + -0.3
204,818 + +1.4
204,818 + +0.6
204,818 + -3.0
204,818 + -0.7
204,818 + -0.8
204,818 + -0.4
204,819 - -0.8
204,819 - +1.7
204,819 - -0.5
204,819 - +0.3
204,819 - -0.4
204,819 - +0.7
204,819 - +0.1
204,819 - -0.1
204,819 - +0.3
205,034 + GFF894 0.47 -0.6
205,034 + GFF894 0.47 +1.3
205,035 - GFF894 0.48 +0.1
205,035 - GFF894 0.48 -0.4
205,035 - GFF894 0.48 +0.3
205,122 - GFF894 0.77 -0.7
205,122 - GFF894 0.77 -0.1
205,122 - GFF894 0.77 +1.9
205,258 + -0.6
205,265 + -1.0
205,265 + -0.8
205,266 - -0.4
205,277 - +0.1
205,382 + GFF895 0.11 -2.3
205,706 + GFF895 0.42 +1.0
205,707 - GFF895 0.42 +0.8
205,782 - GFF895 0.49 -0.7

Or see this region's nucleotide sequence