Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF879 and GFF880 are separated by 45 nucleotides GFF880 and GFF881 are separated by 47 nucleotides GFF881 and GFF882 overlap by 13 nucleotides
GFF879 - BUG/TctC family periplasmic protein, at 188,229 to 189,305
GFF879
GFF880 - conserved hypothetical protein, at 189,351 to 190,094
GFF880
GFF881 - Transcriptional regulator ligR, LysR family, at 190,142 to 191,065
GFF881
GFF882 - Outer membrane porin, at 191,053 to 192,117
GFF882
Position (kb) 189
190
191 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 188.589 kb on + strand, within GFF879 at 188.589 kb on + strand, within GFF879 at 188.634 kb on + strand, within GFF879 at 188.634 kb on + strand, within GFF879 at 188.634 kb on + strand, within GFF879 at 188.635 kb on - strand, within GFF879 at 188.635 kb on - strand, within GFF879 at 188.635 kb on - strand, within GFF879 at 188.640 kb on + strand, within GFF879 at 188.640 kb on + strand, within GFF879 at 188.641 kb on - strand, within GFF879 at 188.641 kb on - strand, within GFF879 at 188.641 kb on - strand, within GFF879 at 188.641 kb on - strand, within GFF879 at 188.641 kb on - strand, within GFF879 at 188.641 kb on - strand, within GFF879 at 188.793 kb on + strand, within GFF879 at 188.794 kb on - strand, within GFF879 at 188.794 kb on - strand, within GFF879 at 188.880 kb on + strand, within GFF879 at 189.124 kb on + strand, within GFF879 at 189.125 kb on - strand, within GFF879 at 189.125 kb on - strand, within GFF879 at 189.125 kb on - strand, within GFF879 at 189.393 kb on + strand at 189.393 kb on + strand at 189.393 kb on + strand at 189.394 kb on - strand at 189.394 kb on - strand at 189.394 kb on - strand at 189.394 kb on - strand at 189.394 kb on - strand at 189.394 kb on - strand at 189.394 kb on - strand at 189.394 kb on - strand at 189.419 kb on + strand at 189.419 kb on + strand at 189.419 kb on + strand at 189.420 kb on - strand at 189.582 kb on + strand, within GFF880 at 189.583 kb on - strand, within GFF880 at 189.583 kb on - strand, within GFF880 at 189.583 kb on - strand, within GFF880 at 189.652 kb on - strand, within GFF880 at 189.652 kb on - strand, within GFF880 at 189.840 kb on + strand, within GFF880 at 189.882 kb on + strand, within GFF880 at 189.882 kb on + strand, within GFF880 at 189.882 kb on + strand, within GFF880 at 190.074 kb on - strand at 190.102 kb on - strand at 190.102 kb on - strand at 190.163 kb on + strand at 190.163 kb on + strand at 190.164 kb on - strand at 190.164 kb on - strand at 190.164 kb on - strand at 190.164 kb on - strand at 190.580 kb on + strand, within GFF881 at 190.580 kb on + strand, within GFF881 at 190.581 kb on - strand, within GFF881 at 191.034 kb on - strand at 191.034 kb on - strand at 191.034 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 188,589 + GFF879 0.33 -2.9 188,589 + GFF879 0.33 -1.4 188,634 + GFF879 0.38 -1.4 188,634 + GFF879 0.38 +0.0 188,634 + GFF879 0.38 -1.5 188,635 - GFF879 0.38 -0.7 188,635 - GFF879 0.38 -0.3 188,635 - GFF879 0.38 +0.6 188,640 + GFF879 0.38 +1.1 188,640 + GFF879 0.38 +0.8 188,641 - GFF879 0.38 -1.9 188,641 - GFF879 0.38 -0.1 188,641 - GFF879 0.38 +0.1 188,641 - GFF879 0.38 -1.8 188,641 - GFF879 0.38 -0.9 188,641 - GFF879 0.38 -1.4 188,793 + GFF879 0.52 +0.4 188,794 - GFF879 0.52 -2.3 188,794 - GFF879 0.52 -1.4 188,880 + GFF879 0.60 -2.5 189,124 + GFF879 0.83 +1.5 189,125 - GFF879 0.83 +0.3 189,125 - GFF879 0.83 -2.2 189,125 - GFF879 0.83 -1.9 189,393 + -2.3 189,393 + -1.4 189,393 + +1.2 189,394 - -3.0 189,394 - -0.7 189,394 - -0.9 189,394 - +1.3 189,394 - -1.3 189,394 - +0.9 189,394 - -0.2 189,394 - -0.7 189,419 + +2.6 189,419 + +0.3 189,419 + +1.6 189,420 - -0.8 189,582 + GFF880 0.31 -1.2 189,583 - GFF880 0.31 +1.7 189,583 - GFF880 0.31 -1.3 189,583 - GFF880 0.31 +0.3 189,652 - GFF880 0.40 +0.3 189,652 - GFF880 0.40 +3.2 189,840 + GFF880 0.66 -0.9 189,882 + GFF880 0.71 +0.9 189,882 + GFF880 0.71 +0.2 189,882 + GFF880 0.71 -1.6 190,074 - +1.0 190,102 - -0.9 190,102 - +0.4 190,163 + -2.3 190,163 + -2.0 190,164 - -1.1 190,164 - +1.4 190,164 - -0.1 190,164 - -0.2 190,580 + GFF881 0.47 -0.8 190,580 + GFF881 0.47 +0.1 190,581 - GFF881 0.48 -2.3 191,034 - -0.4 191,034 - -2.2 191,034 - +2.5
Or see this region's nucleotide sequence