Strain Fitness in Variovorax sp. SCN45 around GFF7360

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
6,949	-		GFF7359	0.11	+1.4
6,949	-		GFF7359	0.11	+1.1
6,949	-		GFF7359	0.11	+0.4
6,961	+		GFF7359	0.12	-0.5
6,961	+		GFF7359	0.12	+0.3
6,962	-		GFF7359	0.12	+0.6
6,962	-		GFF7359	0.12	-0.2
6,962	-		GFF7359	0.12	+2.9
6,962	-		GFF7359	0.12	+0.7
6,962	-		GFF7359	0.12	-0.7
6,963	+		GFF7359	0.12	-0.2
6,964	-		GFF7359	0.12	-0.0
7,089	+		GFF7359	0.27	+0.3
7,089	+		GFF7359	0.27	+0.3
7,274	+		GFF7359	0.48	+0.3
7,274	+		GFF7359	0.48	-0.1
7,274	+		GFF7359	0.48	+0.8
7,275	-		GFF7359	0.48	-1.1
7,275	-		GFF7359	0.48	-1.2
7,275	-		GFF7359	0.48	-1.2
7,275	-		GFF7359	0.48	+0.4
7,291	+		GFF7359	0.50	+0.3
7,292	-		GFF7359	0.50	-0.1
7,415	+		GFF7359	0.64	-0.4
7,502	+		GFF7359	0.74	+1.4
7,502	+		GFF7359	0.74	+0.6
7,595	+		GFF7359	0.85	+2.3
7,595	+		GFF7359	0.85	-1.8
7,596	-		GFF7359	0.85	+0.1
7,644	+				-0.8
7,644	+				-0.1
7,644	+				+0.7
7,644	+				-0.7
7,644	+				-0.5
7,645	-				+0.6
7,645	-				+0.5
7,677	+				+0.1
7,677	+				-0.7
7,762	+				-0.7
7,762	+				+0.1
7,763	-				-1.8
7,763	-				-1.7
7,804	+				+0.8
7,805	-				-0.7
7,852	+				+0.9
7,853	-				-2.8
7,874	-				-2.1
7,966	+		GFF7360	0.18	+0.7
7,967	-		GFF7360	0.18	-1.2
8,014	+		GFF7360	0.22	-0.8
8,015	-		GFF7360	0.22	-0.1
8,015	-		GFF7360	0.22	-0.6
8,015	-		GFF7360	0.22	+0.0
8,137	+		GFF7360	0.33	-0.2
8,137	+		GFF7360	0.33	-2.7
8,138	-		GFF7360	0.33	+1.2
8,138	-		GFF7360	0.33	-0.4
8,197	+		GFF7360	0.38	+0.4
8,197	+		GFF7360	0.38	+2.4
8,198	-		GFF7360	0.38	+0.4
8,363	+		GFF7360	0.53	-0.1
8,364	-		GFF7360	0.53	+0.3
8,426	-		GFF7360	0.58	-1.4
8,627	+		GFF7360	0.76	-1.1
8,628	-		GFF7360	0.76	-1.5
8,690	-		GFF7360	0.81	+1.2
8,694	+		GFF7360	0.82	+0.0
8,749	+		GFF7360	0.87	+1.6
8,749	+		GFF7360	0.87	-0.9
8,843	-				-1.0
8,913	+				+2.8
8,914	-				+2.6
8,917	-				-1.6
8,969	+				-2.2
9,059	+		GFF7361	0.21	-0.9
9,106	-		GFF7361	0.32	-1.4
9,106	-		GFF7361	0.32	-2.2
9,106	-		GFF7361	0.32	+2.4
9,106	-		GFF7361	0.32	+0.2
9,106	-		GFF7361	0.32	-0.8
9,106	-		GFF7361	0.32	+2.1
9,108	-		GFF7361	0.32	-1.5
9,108	-		GFF7361	0.32	-1.3
9,469	+				-0.4