Strain Fitness in Variovorax sp. SCN45 around GFF7077

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
110	+		GFF7076	0.80	+0.9
110	+		GFF7076	0.80	+1.2
111	-		GFF7076	0.81	-0.1
354	+		GFF7077	0.55	-0.7
354	+		GFF7077	0.55	-0.8
534	+				+0.1
534	+				+0.6
534	+				+1.5
534	+				-0.5
534	+				-1.1
534	+				-1.1
535	-				-1.7
535	-				-2.2
535	-				-1.6
535	-				+0.9
535	-				+0.4
535	-				-2.1
535	-				-0.5
551	+				-2.4
551	+				+0.2
551	+				-0.3
551	+				-0.5
552	-				-1.6
673	+				+3.5
673	+				+2.3
673	+				+0.2
673	+				-3.7
674	-				+0.1
773	-		GFF7078	0.59	+0.6
773	-		GFF7078	0.59	+0.0
851	+				+1.1
851	+				-1.0
851	+				+0.8
851	+				-1.3
852	-				+1.9
852	-				-1.6
871	-				+1.2
871	-				-1.4
997	-		GFF7079	0.44	-0.5
1,158	+				-1.6
1,159	-				-1.2
1,159	-				-1.6
1,180	-				+1.2
1,219	+				-0.6
1,219	+				-0.0
1,219	+				-1.3
1,220	-				-0.9
1,220	-				-0.6
1,319	+		GFF7080	0.29	+2.1
1,355	+		GFF7080	0.43	-0.4
1,355	+		GFF7080	0.43	-2.4
1,355	+		GFF7080	0.43	-0.8
1,356	-		GFF7080	0.43	+0.4
1,356	-		GFF7080	0.43	-0.7
1,356	-		GFF7080	0.43	+1.8
1,356	-		GFF7080	0.43	-0.6
1,402	+		GFF7080	0.62	-0.2
1,402	+		GFF7080	0.62	-1.1
1,402	+		GFF7080	0.62	-0.4
1,526	+				+0.4
1,526	+				-1.5
1,527	-				-0.1
1,527	-				-3.4
1,527	-				-1.5
1,527	-				+0.2
1,527	-				+0.1
1,527	-				+0.0
1,527	-				-3.3