Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6993 and GFF6994 overlap by 4 nucleotides GFF6994 and GFF6995 overlap by 4 nucleotides GFF6995 and GFF6996 overlap by 4 nucleotides GFF6996 and GFF6997 overlap by 4 nucleotides GFF6997 and GFF6998 are separated by 1 nucleotides
GFF6993 - no description, at 10,931 to 11,773
GFF6993
GFF6994 - hypothetical protein, at 11,770 to 12,390
GFF6994
GFF6995 - Flagellar M-ring protein FliF, at 12,387 to 13,901
GFF6995
GFF6996 - Flagellar hook-basal body complex protein FliE, at 13,898 to 14,263
GFF6996
GFF6997 - Flagellar basal-body rod protein FlgC, at 14,260 to 14,709
GFF6997
GFF6998 - Flagellar basal-body rod protein FlgB, at 14,711 to 15,094
GFF6998
Position (kb) 12
13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 11.788 kb on - strand at 11.788 kb on - strand at 13.204 kb on + strand, within GFF6995 at 13.880 kb on + strand at 13.880 kb on + strand at 13.901 kb on + strand at 13.915 kb on + strand at 14.048 kb on + strand, within GFF6996 at 14.337 kb on - strand, within GFF6997 at 14.439 kb on - strand, within GFF6997 at 14.702 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 11,788 - -2.5 11,788 - +0.1 13,204 + GFF6995 0.54 -1.2 13,880 + -1.2 13,880 + +0.3 13,901 + -2.4 13,915 + +0.4 14,048 + GFF6996 0.41 +0.3 14,337 - GFF6997 0.17 +0.6 14,439 - GFF6997 0.40 -1.0 14,702 + -2.9
Or see this region's nucleotide sequence