Strain Fitness in Variovorax sp. SCN45 around GFF6923

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6922 and GFF6923 are separated by 52 nucleotidesGFF6923 and GFF6924 overlap by 4 nucleotidesGFF6924 and GFF6925 are separated by 121 nucleotides GFF6922 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein, at 616 to 1,542 GFF6922 GFF6923 - Acetate permease ActP (cation/acetate symporter), at 1,595 to 3,331 GFF6923 GFF6924 - protein of unknown function DUF485, at 3,328 to 3,645 GFF6924 GFF6925 - Acetyl-CoA synthetase (EC 6.2.1.1), at 3,767 to 5,743 GFF6925 Position (kb) 1 2 3 4Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 0.628 kb on + strandat 0.740 kb on - strand, within GFF6922at 1.327 kb on + strand, within GFF6922at 1.327 kb on + strand, within GFF6922at 1.327 kb on + strand, within GFF6922at 1.327 kb on + strand, within GFF6922at 1.396 kb on + strand, within GFF6922at 1.397 kb on - strand, within GFF6922at 1.478 kb on - strandat 2.091 kb on + strand, within GFF6923at 2.091 kb on + strand, within GFF6923at 2.092 kb on - strand, within GFF6923at 2.092 kb on - strand, within GFF6923at 2.328 kb on + strand, within GFF6923at 2.329 kb on - strand, within GFF6923at 2.715 kb on + strand, within GFF6923at 2.715 kb on + strand, within GFF6923at 2.715 kb on + strand, within GFF6923at 2.715 kb on + strand, within GFF6923at 2.715 kb on + strand, within GFF6923at 2.716 kb on - strand, within GFF6923at 2.716 kb on - strand, within GFF6923at 2.716 kb on - strand, within GFF6923at 2.757 kb on + strand, within GFF6923at 2.817 kb on + strand, within GFF6923at 2.818 kb on - strand, within GFF6923at 2.982 kb on + strand, within GFF6923at 2.982 kb on + strand, within GFF6923at 2.983 kb on - strand, within GFF6923at 2.997 kb on + strand, within GFF6923at 3.051 kb on + strand, within GFF6923at 3.052 kb on - strand, within GFF6923at 3.052 kb on - strand, within GFF6923at 3.052 kb on - strand, within GFF6923at 3.109 kb on - strand, within GFF6923at 3.109 kb on - strand, within GFF6923at 3.109 kb on - strand, within GFF6923at 3.109 kb on - strand, within GFF6923at 3.404 kb on + strand, within GFF6924at 3.404 kb on + strand, within GFF6924at 3.405 kb on - strand, within GFF6924at 3.405 kb on - strand, within GFF6924at 3.407 kb on + strand, within GFF6924at 3.407 kb on + strand, within GFF6924at 3.408 kb on - strand, within GFF6924at 3.408 kb on - strand, within GFF6924at 3.408 kb on - strand, within GFF6924at 3.536 kb on + strand, within GFF6924at 3.803 kb on + strandat 3.804 kb on - strandat 3.980 kb on + strand, within GFF6925at 4.109 kb on + strand, within GFF6925at 4.109 kb on + strand, within GFF6925at 4.193 kb on + strand, within GFF6925at 4.193 kb on + strand, within GFF6925at 4.194 kb on - strand, within GFF6925at 4.194 kb on - strand, within GFF6925at 4.194 kb on - strand, within GFF6925at 4.194 kb on - strand, within GFF6925at 4.194 kb on - strand, within GFF6925at 4.194 kb on - strand, within GFF6925at 4.194 kb on - strand, within GFF6925

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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628 + +2.2
740 - GFF6922 0.13 -0.2
1,327 + GFF6922 0.77 -1.9
1,327 + GFF6922 0.77 +0.6
1,327 + GFF6922 0.77 -1.4
1,327 + GFF6922 0.77 -2.7
1,396 + GFF6922 0.84 +2.2
1,397 - GFF6922 0.84 +0.2
1,478 - +0.4
2,091 + GFF6923 0.29 +0.4
2,091 + GFF6923 0.29 +1.2
2,092 - GFF6923 0.29 +1.3
2,092 - GFF6923 0.29 +0.1
2,328 + GFF6923 0.42 -0.4
2,329 - GFF6923 0.42 -0.4
2,715 + GFF6923 0.64 +1.7
2,715 + GFF6923 0.64 -0.8
2,715 + GFF6923 0.64 -1.8
2,715 + GFF6923 0.64 -1.0
2,715 + GFF6923 0.64 +0.2
2,716 - GFF6923 0.65 +0.5
2,716 - GFF6923 0.65 +0.1
2,716 - GFF6923 0.65 +0.8
2,757 + GFF6923 0.67 -0.9
2,817 + GFF6923 0.70 +0.2
2,818 - GFF6923 0.70 +0.9
2,982 + GFF6923 0.80 -0.2
2,982 + GFF6923 0.80 -1.0
2,983 - GFF6923 0.80 -1.2
2,997 + GFF6923 0.81 -0.3
3,051 + GFF6923 0.84 +0.3
3,052 - GFF6923 0.84 +0.0
3,052 - GFF6923 0.84 -0.3
3,052 - GFF6923 0.84 -0.5
3,109 - GFF6923 0.87 -1.8
3,109 - GFF6923 0.87 +0.0
3,109 - GFF6923 0.87 +0.8
3,109 - GFF6923 0.87 -0.3
3,404 + GFF6924 0.24 +0.6
3,404 + GFF6924 0.24 +0.6
3,405 - GFF6924 0.24 -2.0
3,405 - GFF6924 0.24 -0.5
3,407 + GFF6924 0.25 +2.4
3,407 + GFF6924 0.25 -1.5
3,408 - GFF6924 0.25 -0.8
3,408 - GFF6924 0.25 +1.5
3,408 - GFF6924 0.25 -0.2
3,536 + GFF6924 0.65 -1.1
3,803 + -1.7
3,804 - +1.2
3,980 + GFF6925 0.11 +0.4
4,109 + GFF6925 0.17 +1.0
4,109 + GFF6925 0.17 -1.1
4,193 + GFF6925 0.22 +1.5
4,193 + GFF6925 0.22 +0.2
4,194 - GFF6925 0.22 -1.4
4,194 - GFF6925 0.22 -0.7
4,194 - GFF6925 0.22 -2.8
4,194 - GFF6925 0.22 -0.6
4,194 - GFF6925 0.22 -1.2
4,194 - GFF6925 0.22 -0.6
4,194 - GFF6925 0.22 +1.5

Or see this region's nucleotide sequence