Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF679 and GFF680 overlap by 32 nucleotides GFF680 and GFF681 are separated by 174 nucleotides GFF681 and GFF682 overlap by 4 nucleotides GFF682 and GFF683 overlap by 12 nucleotides
GFF679 - DNA polymerase-like protein PA0670, at 733,393 to 734,748
GFF679
GFF680 - RecA/RadA recombinase, at 734,717 to 735,523
GFF680
GFF681 - Hypothetical protein in cluster with At3g50560-like gene family, at 735,698 to 736,537
GFF681
GFF682 - 2-hydroxychromene-2-carboxylate isomerase family protein, at 736,534 to 737,139
GFF682
GFF683 - Transcriptional regulator, LysR family, at 737,128 to 738,048
GFF683
Position (kb) 735
736
737 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 734.723 kb on - strand at 734.723 kb on - strand at 734.723 kb on - strand at 734.723 kb on - strand at 734.723 kb on - strand at 734.723 kb on - strand at 735.255 kb on + strand, within GFF680 at 735.256 kb on - strand, within GFF680 at 735.537 kb on - strand at 735.537 kb on - strand at 735.537 kb on - strand at 735.542 kb on + strand at 735.550 kb on + strand at 735.555 kb on + strand at 735.555 kb on + strand at 735.555 kb on + strand at 735.555 kb on + strand at 735.555 kb on + strand at 735.555 kb on + strand at 735.556 kb on - strand at 735.608 kb on + strand at 735.681 kb on + strand at 735.681 kb on + strand at 735.681 kb on + strand at 735.682 kb on - strand at 735.737 kb on + strand at 735.737 kb on + strand at 735.737 kb on + strand at 735.737 kb on + strand at 735.738 kb on - strand at 735.738 kb on - strand at 735.738 kb on - strand at 735.738 kb on - strand at 735.770 kb on + strand at 735.770 kb on + strand at 735.770 kb on + strand at 735.771 kb on - strand at 735.771 kb on - strand at 735.815 kb on + strand, within GFF681 at 735.815 kb on + strand, within GFF681 at 735.815 kb on + strand, within GFF681 at 735.815 kb on + strand, within GFF681 at 735.815 kb on + strand, within GFF681 at 735.815 kb on + strand, within GFF681 at 735.816 kb on - strand, within GFF681 at 735.816 kb on - strand, within GFF681 at 735.816 kb on - strand, within GFF681 at 735.816 kb on - strand, within GFF681 at 735.953 kb on + strand, within GFF681 at 735.953 kb on + strand, within GFF681 at 735.954 kb on - strand, within GFF681 at 736.118 kb on + strand, within GFF681 at 736.118 kb on + strand, within GFF681 at 736.119 kb on - strand, within GFF681 at 736.119 kb on - strand, within GFF681 at 736.119 kb on - strand, within GFF681 at 736.119 kb on - strand, within GFF681 at 736.193 kb on + strand, within GFF681 at 736.193 kb on + strand, within GFF681 at 736.193 kb on + strand, within GFF681 at 736.194 kb on - strand, within GFF681 at 736.194 kb on - strand, within GFF681 at 736.331 kb on + strand, within GFF681 at 736.331 kb on + strand, within GFF681 at 736.331 kb on + strand, within GFF681 at 736.332 kb on - strand, within GFF681 at 736.332 kb on - strand, within GFF681 at 736.332 kb on - strand, within GFF681 at 736.367 kb on + strand, within GFF681 at 736.367 kb on + strand, within GFF681 at 736.367 kb on + strand, within GFF681 at 736.367 kb on + strand, within GFF681 at 736.412 kb on + strand, within GFF681 at 736.413 kb on - strand, within GFF681 at 736.413 kb on - strand, within GFF681 at 736.443 kb on - strand, within GFF681 at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.579 kb on + strand at 736.579 kb on + strand at 736.579 kb on + strand at 736.579 kb on + strand at 736.579 kb on + strand at 736.580 kb on - strand at 736.580 kb on - strand at 736.580 kb on - strand at 736.580 kb on - strand at 736.580 kb on - strand at 736.580 kb on - strand at 736.720 kb on + strand, within GFF682 at 736.720 kb on + strand, within GFF682 at 736.720 kb on + strand, within GFF682 at 736.720 kb on + strand, within GFF682 at 736.721 kb on - strand, within GFF682 at 736.721 kb on - strand, within GFF682 at 736.721 kb on - strand, within GFF682 at 736.721 kb on - strand, within GFF682 at 736.721 kb on - strand, within GFF682 at 736.721 kb on - strand, within GFF682 at 736.756 kb on + strand, within GFF682 at 736.757 kb on - strand, within GFF682 at 736.757 kb on - strand, within GFF682 at 737.222 kb on + strand, within GFF683 at 737.222 kb on + strand, within GFF683 at 737.223 kb on - strand, within GFF683 at 737.223 kb on - strand, within GFF683 at 737.223 kb on - strand, within GFF683 at 737.223 kb on - strand, within GFF683 at 737.223 kb on - strand, within GFF683 at 737.360 kb on + strand, within GFF683 at 737.361 kb on - strand, within GFF683
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 734,723 - -2.1 734,723 - -0.7 734,723 - +4.2 734,723 - -2.7 734,723 - +0.3 734,723 - -0.8 735,255 + GFF680 0.67 -0.5 735,256 - GFF680 0.67 -0.4 735,537 - -0.4 735,537 - -0.0 735,537 - -2.5 735,542 + +0.0 735,550 + +3.4 735,555 + +1.3 735,555 + -0.5 735,555 + -2.4 735,555 + -0.4 735,555 + -0.2 735,555 + -0.8 735,556 - -0.9 735,608 + -0.2 735,681 + -1.4 735,681 + +1.8 735,681 + -2.1 735,682 - +0.4 735,737 + +0.5 735,737 + -0.0 735,737 + -1.2 735,737 + -2.0 735,738 - -0.9 735,738 - +1.5 735,738 - -0.8 735,738 - -0.5 735,770 + -1.2 735,770 + -0.6 735,770 + -0.5 735,771 - -0.4 735,771 - +0.5 735,815 + GFF681 0.14 -1.6 735,815 + GFF681 0.14 -0.8 735,815 + GFF681 0.14 -1.6 735,815 + GFF681 0.14 -1.4 735,815 + GFF681 0.14 -0.2 735,815 + GFF681 0.14 +2.5 735,816 - GFF681 0.14 -1.9 735,816 - GFF681 0.14 +1.1 735,816 - GFF681 0.14 +0.3 735,816 - GFF681 0.14 +0.9 735,953 + GFF681 0.30 +0.5 735,953 + GFF681 0.30 +0.2 735,954 - GFF681 0.30 -0.4 736,118 + GFF681 0.50 +1.7 736,118 + GFF681 0.50 -1.8 736,119 - GFF681 0.50 -1.3 736,119 - GFF681 0.50 -0.5 736,119 - GFF681 0.50 -2.2 736,119 - GFF681 0.50 -0.3 736,193 + GFF681 0.59 -0.1 736,193 + GFF681 0.59 +0.6 736,193 + GFF681 0.59 +0.8 736,194 - GFF681 0.59 -0.2 736,194 - GFF681 0.59 +1.2 736,331 + GFF681 0.75 +0.6 736,331 + GFF681 0.75 -0.7 736,331 + GFF681 0.75 -0.2 736,332 - GFF681 0.75 -3.4 736,332 - GFF681 0.75 +1.9 736,332 - GFF681 0.75 -1.9 736,367 + GFF681 0.80 +0.7 736,367 + GFF681 0.80 -0.1 736,367 + GFF681 0.80 +1.8 736,367 + GFF681 0.80 +0.2 736,412 + GFF681 0.85 -0.5 736,413 - GFF681 0.85 +0.3 736,413 - GFF681 0.85 -0.2 736,443 - GFF681 0.89 -2.7 736,573 + +0.2 736,573 + -1.4 736,573 + -1.2 736,573 + -1.0 736,573 + +1.8 736,573 + -2.4 736,573 + -1.6 736,573 + -0.9 736,573 + -1.3 736,573 + -1.8 736,573 + +0.6 736,573 + -1.2 736,573 + -2.0 736,573 + +0.2 736,573 + -3.2 736,574 - +1.8 736,574 - -1.4 736,574 - -0.4 736,574 - +0.7 736,574 - +0.4 736,574 - -0.3 736,574 - -1.6 736,574 - -2.4 736,574 - +0.7 736,574 - +0.8 736,574 - -0.2 736,574 - +0.3 736,574 - +1.0 736,579 + -0.1 736,579 + +0.2 736,579 + -2.1 736,579 + +0.6 736,579 + -0.7 736,580 - -0.5 736,580 - -0.6 736,580 - +0.2 736,580 - -1.0 736,580 - +0.1 736,580 - +0.6 736,720 + GFF682 0.31 +0.1 736,720 + GFF682 0.31 +1.1 736,720 + GFF682 0.31 +1.4 736,720 + GFF682 0.31 -2.0 736,721 - GFF682 0.31 +0.2 736,721 - GFF682 0.31 +0.1 736,721 - GFF682 0.31 -1.4 736,721 - GFF682 0.31 -0.8 736,721 - GFF682 0.31 +0.7 736,721 - GFF682 0.31 -0.9 736,756 + GFF682 0.37 +1.0 736,757 - GFF682 0.37 -1.6 736,757 - GFF682 0.37 -0.0 737,222 + GFF683 0.10 -1.5 737,222 + GFF683 0.10 -1.6 737,223 - GFF683 0.10 -1.0 737,223 - GFF683 0.10 +0.2 737,223 - GFF683 0.10 -1.0 737,223 - GFF683 0.10 -0.1 737,223 - GFF683 0.10 -2.2 737,360 + GFF683 0.25 -0.2 737,361 - GFF683 0.25 -1.2
Or see this region's nucleotide sequence