Strain Fitness in Variovorax sp. SCN45 around GFF6594

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6593 and GFF6594 are separated by 83 nucleotidesGFF6594 and GFF6595 are separated by 94 nucleotides GFF6593 - Alcohol dehydrogenase (EC 1.1.1.1), at 36,312 to 37,580 GFF6593 GFF6594 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 37,664 to 38,485 GFF6594 GFF6595 - Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD, at 38,580 to 40,082 GFF6595 Position (kb) 37 38 39Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 36.706 kb on + strand, within GFF6593at 36.706 kb on + strand, within GFF6593at 36.706 kb on + strand, within GFF6593at 36.706 kb on + strand, within GFF6593at 36.706 kb on + strand, within GFF6593at 36.706 kb on + strand, within GFF6593at 36.706 kb on + strand, within GFF6593at 36.706 kb on + strand, within GFF6593at 36.706 kb on + strand, within GFF6593at 36.706 kb on + strand, within GFF6593at 36.706 kb on + strand, within GFF6593at 36.706 kb on + strand, within GFF6593at 36.706 kb on + strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.707 kb on - strand, within GFF6593at 36.873 kb on + strand, within GFF6593at 36.873 kb on + strand, within GFF6593at 36.873 kb on + strand, within GFF6593at 36.873 kb on + strand, within GFF6593at 36.873 kb on + strand, within GFF6593at 36.874 kb on - strand, within GFF6593at 36.874 kb on - strand, within GFF6593at 36.874 kb on - strand, within GFF6593at 36.963 kb on + strand, within GFF6593at 36.964 kb on - strand, within GFF6593at 36.964 kb on - strand, within GFF6593at 36.994 kb on - strand, within GFF6593at 36.994 kb on - strand, within GFF6593at 36.996 kb on - strand, within GFF6593at 37.071 kb on + strand, within GFF6593at 37.071 kb on + strand, within GFF6593at 37.113 kb on + strand, within GFF6593at 37.179 kb on + strand, within GFF6593at 37.180 kb on - strand, within GFF6593at 37.180 kb on - strand, within GFF6593at 37.180 kb on - strand, within GFF6593at 37.239 kb on + strand, within GFF6593at 37.240 kb on - strand, within GFF6593at 37.240 kb on - strand, within GFF6593at 37.650 kb on + strandat 37.650 kb on + strandat 37.700 kb on + strandat 37.700 kb on + strandat 37.701 kb on - strandat 37.701 kb on - strandat 37.725 kb on - strandat 37.754 kb on + strand, within GFF6594at 37.754 kb on + strand, within GFF6594at 37.755 kb on - strand, within GFF6594at 37.761 kb on + strand, within GFF6594at 37.762 kb on - strand, within GFF6594at 37.762 kb on - strand, within GFF6594at 37.762 kb on - strand, within GFF6594at 37.782 kb on - strand, within GFF6594at 37.877 kb on + strand, within GFF6594at 37.878 kb on - strand, within GFF6594at 37.922 kb on + strand, within GFF6594at 37.922 kb on + strand, within GFF6594at 37.923 kb on - strand, within GFF6594at 37.923 kb on - strand, within GFF6594at 37.923 kb on - strand, within GFF6594at 37.953 kb on - strand, within GFF6594at 37.953 kb on - strand, within GFF6594at 38.096 kb on + strand, within GFF6594at 38.096 kb on + strand, within GFF6594at 38.127 kb on - strand, within GFF6594at 38.150 kb on + strand, within GFF6594at 38.151 kb on - strand, within GFF6594at 38.255 kb on + strand, within GFF6594at 38.255 kb on + strand, within GFF6594at 38.256 kb on - strand, within GFF6594at 38.256 kb on - strand, within GFF6594at 38.256 kb on - strand, within GFF6594at 38.299 kb on + strand, within GFF6594at 38.299 kb on + strand, within GFF6594at 38.299 kb on + strand, within GFF6594at 38.590 kb on + strandat 38.590 kb on + strandat 38.591 kb on - strandat 38.591 kb on - strandat 38.595 kb on - strandat 38.666 kb on - strandat 38.683 kb on + strandat 38.683 kb on + strandat 38.684 kb on - strandat 38.794 kb on + strand, within GFF6595at 38.978 kb on - strand, within GFF6595at 39.006 kb on + strand, within GFF6595at 39.007 kb on - strand, within GFF6595at 39.009 kb on + strand, within GFF6595at 39.010 kb on - strand, within GFF6595at 39.427 kb on - strand, within GFF6595

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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36,706 + GFF6593 0.31 +0.6
36,706 + GFF6593 0.31 +0.7
36,706 + GFF6593 0.31 +2.4
36,706 + GFF6593 0.31 +3.3
36,706 + GFF6593 0.31 +0.2
36,706 + GFF6593 0.31 +0.6
36,706 + GFF6593 0.31 +1.1
36,706 + GFF6593 0.31 +1.5
36,706 + GFF6593 0.31 -1.7
36,706 + GFF6593 0.31 -1.3
36,706 + GFF6593 0.31 -0.4
36,706 + GFF6593 0.31 -1.2
36,706 + GFF6593 0.31 +0.9
36,707 - GFF6593 0.31 +1.1
36,707 - GFF6593 0.31 +0.8
36,707 - GFF6593 0.31 +0.9
36,707 - GFF6593 0.31 -2.5
36,707 - GFF6593 0.31 +0.3
36,707 - GFF6593 0.31 -0.9
36,707 - GFF6593 0.31 -1.2
36,707 - GFF6593 0.31 -2.5
36,707 - GFF6593 0.31 -1.7
36,707 - GFF6593 0.31 -0.7
36,707 - GFF6593 0.31 +0.9
36,707 - GFF6593 0.31 -1.0
36,707 - GFF6593 0.31 +1.4
36,707 - GFF6593 0.31 +0.3
36,707 - GFF6593 0.31 -0.1
36,707 - GFF6593 0.31 -0.1
36,707 - GFF6593 0.31 -1.5
36,707 - GFF6593 0.31 +0.1
36,873 + GFF6593 0.44 +0.8
36,873 + GFF6593 0.44 +0.4
36,873 + GFF6593 0.44 +0.5
36,873 + GFF6593 0.44 -1.9
36,873 + GFF6593 0.44 -1.4
36,874 - GFF6593 0.44 +1.0
36,874 - GFF6593 0.44 +1.3
36,874 - GFF6593 0.44 -0.1
36,963 + GFF6593 0.51 +0.9
36,964 - GFF6593 0.51 +0.8
36,964 - GFF6593 0.51 -1.9
36,994 - GFF6593 0.54 -0.9
36,994 - GFF6593 0.54 -0.5
36,996 - GFF6593 0.54 -0.5
37,071 + GFF6593 0.60 -0.7
37,071 + GFF6593 0.60 -1.7
37,113 + GFF6593 0.63 -0.9
37,179 + GFF6593 0.68 -2.2
37,180 - GFF6593 0.68 -1.8
37,180 - GFF6593 0.68 -1.8
37,180 - GFF6593 0.68 +0.9
37,239 + GFF6593 0.73 -0.4
37,240 - GFF6593 0.73 +1.7
37,240 - GFF6593 0.73 -0.7
37,650 + -1.7
37,650 + -3.2
37,700 + +0.5
37,700 + -2.2
37,701 - +1.9
37,701 - -1.7
37,725 - -0.1
37,754 + GFF6594 0.11 -0.1
37,754 + GFF6594 0.11 -1.4
37,755 - GFF6594 0.11 -1.0
37,761 + GFF6594 0.12 -1.8
37,762 - GFF6594 0.12 -0.7
37,762 - GFF6594 0.12 -1.9
37,762 - GFF6594 0.12 -1.7
37,782 - GFF6594 0.14 -0.7
37,877 + GFF6594 0.26 -0.2
37,878 - GFF6594 0.26 -0.1
37,922 + GFF6594 0.31 -1.7
37,922 + GFF6594 0.31 +2.1
37,923 - GFF6594 0.32 -1.3
37,923 - GFF6594 0.32 +1.1
37,923 - GFF6594 0.32 -3.7
37,953 - GFF6594 0.35 -0.9
37,953 - GFF6594 0.35 -0.2
38,096 + GFF6594 0.53 +0.2
38,096 + GFF6594 0.53 -0.2
38,127 - GFF6594 0.56 -2.9
38,150 + GFF6594 0.59 -0.6
38,151 - GFF6594 0.59 +0.6
38,255 + GFF6594 0.72 +0.6
38,255 + GFF6594 0.72 -0.9
38,256 - GFF6594 0.72 -1.2
38,256 - GFF6594 0.72 +0.3
38,256 - GFF6594 0.72 -0.9
38,299 + GFF6594 0.77 -1.2
38,299 + GFF6594 0.77 -0.6
38,299 + GFF6594 0.77 -0.4
38,590 + -0.9
38,590 + -0.9
38,591 - -0.1
38,591 - -1.3
38,595 - -0.1
38,666 - -1.5
38,683 + +0.1
38,683 + -0.6
38,684 - -0.1
38,794 + GFF6595 0.14 +0.1
38,978 - GFF6595 0.26 +0.1
39,006 + GFF6595 0.28 +1.9
39,007 - GFF6595 0.28 +0.4
39,009 + GFF6595 0.29 +0.8
39,010 - GFF6595 0.29 -2.8
39,427 - GFF6595 0.56 -1.1

Or see this region's nucleotide sequence