Strain Fitness in Variovorax sp. SCN45 around GFF656

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF654 and GFF655 are separated by 18 nucleotidesGFF655 and GFF656 are separated by 14 nucleotidesGFF656 and GFF657 are separated by 253 nucleotidesGFF657 and GFF658 are separated by 264 nucleotides GFF654 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 705,475 to 706,236 GFF654 GFF655 - hypothetical protein, at 706,255 to 706,674 GFF655 GFF656 - macromolecule metabolism; macromolecule degradation; degradation of proteins, peptides, glycopeptides, at 706,689 to 708,935 GFF656 GFF657 - no description, at 709,189 to 709,365 GFF657 GFF658 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 709,630 to 710,646 GFF658 Position (kb) 706 707 708 709Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 705.793 kb on + strand, within GFF654at 705.793 kb on + strand, within GFF654at 705.793 kb on + strand, within GFF654at 705.793 kb on + strand, within GFF654at 705.794 kb on - strand, within GFF654at 705.794 kb on - strand, within GFF654at 705.794 kb on - strand, within GFF654at 705.794 kb on - strand, within GFF654at 705.814 kb on + strand, within GFF654at 705.815 kb on - strand, within GFF654at 705.815 kb on - strand, within GFF654at 705.815 kb on - strand, within GFF654at 705.901 kb on + strand, within GFF654at 705.901 kb on + strand, within GFF654at 706.243 kb on + strandat 706.265 kb on + strandat 706.265 kb on + strandat 706.266 kb on - strandat 706.289 kb on + strandat 706.500 kb on - strand, within GFF655at 706.500 kb on - strand, within GFF655at 706.500 kb on - strand, within GFF655at 706.562 kb on + strand, within GFF655at 706.563 kb on - strand, within GFF655at 706.563 kb on - strand, within GFF655at 706.563 kb on - strand, within GFF655at 706.563 kb on - strand, within GFF655at 706.699 kb on + strandat 706.747 kb on + strandat 706.748 kb on - strandat 706.856 kb on - strandat 706.984 kb on + strand, within GFF656at 706.984 kb on + strand, within GFF656at 706.985 kb on - strand, within GFF656at 706.996 kb on + strand, within GFF656at 706.996 kb on + strand, within GFF656at 706.996 kb on + strand, within GFF656at 706.997 kb on - strand, within GFF656at 706.997 kb on - strand, within GFF656at 706.997 kb on - strand, within GFF656at 706.997 kb on - strand, within GFF656at 706.999 kb on + strand, within GFF656at 706.999 kb on + strand, within GFF656at 706.999 kb on + strand, within GFF656at 706.999 kb on + strand, within GFF656at 707.000 kb on - strand, within GFF656at 707.000 kb on - strand, within GFF656at 707.000 kb on - strand, within GFF656at 707.188 kb on + strand, within GFF656at 707.188 kb on + strand, within GFF656at 707.188 kb on + strand, within GFF656at 707.188 kb on + strand, within GFF656at 707.189 kb on - strand, within GFF656at 707.189 kb on - strand, within GFF656at 707.189 kb on - strand, within GFF656at 707.189 kb on - strand, within GFF656at 707.189 kb on - strand, within GFF656at 707.341 kb on + strand, within GFF656at 707.342 kb on - strand, within GFF656at 707.342 kb on - strand, within GFF656at 707.342 kb on - strand, within GFF656at 707.342 kb on - strand, within GFF656at 707.353 kb on + strand, within GFF656at 707.353 kb on + strand, within GFF656at 707.353 kb on + strand, within GFF656at 707.354 kb on - strand, within GFF656at 707.392 kb on + strand, within GFF656at 707.392 kb on + strand, within GFF656at 707.392 kb on + strand, within GFF656at 707.393 kb on - strand, within GFF656at 707.431 kb on + strand, within GFF656at 707.432 kb on - strand, within GFF656at 707.548 kb on + strand, within GFF656at 707.549 kb on - strand, within GFF656at 707.549 kb on - strand, within GFF656at 707.549 kb on - strand, within GFF656at 707.563 kb on + strand, within GFF656at 707.563 kb on + strand, within GFF656at 707.563 kb on + strand, within GFF656at 707.563 kb on + strand, within GFF656at 707.564 kb on - strand, within GFF656at 707.564 kb on - strand, within GFF656at 707.564 kb on - strand, within GFF656at 707.564 kb on - strand, within GFF656at 707.564 kb on - strand, within GFF656at 707.564 kb on - strand, within GFF656at 707.564 kb on - strand, within GFF656at 707.566 kb on + strand, within GFF656at 707.710 kb on + strand, within GFF656at 707.815 kb on + strand, within GFF656at 707.815 kb on + strand, within GFF656at 707.815 kb on + strand, within GFF656at 707.815 kb on + strand, within GFF656at 707.815 kb on + strand, within GFF656at 707.815 kb on + strand, within GFF656at 707.815 kb on + strand, within GFF656at 707.816 kb on - strand, within GFF656at 707.872 kb on + strand, within GFF656at 707.874 kb on - strand, within GFF656at 707.878 kb on + strand, within GFF656at 707.878 kb on + strand, within GFF656at 707.878 kb on + strand, within GFF656at 707.878 kb on + strand, within GFF656at 707.878 kb on + strand, within GFF656at 707.879 kb on - strand, within GFF656at 707.879 kb on - strand, within GFF656at 707.882 kb on - strand, within GFF656at 707.882 kb on - strand, within GFF656at 707.882 kb on - strand, within GFF656at 707.882 kb on - strand, within GFF656at 707.884 kb on + strand, within GFF656at 707.884 kb on + strand, within GFF656at 707.885 kb on - strand, within GFF656at 707.885 kb on - strand, within GFF656at 707.885 kb on - strand, within GFF656at 708.040 kb on + strand, within GFF656at 708.040 kb on + strand, within GFF656at 708.040 kb on + strand, within GFF656at 708.041 kb on - strand, within GFF656at 708.041 kb on - strand, within GFF656at 708.041 kb on - strand, within GFF656at 708.041 kb on - strand, within GFF656at 708.083 kb on - strand, within GFF656at 708.108 kb on + strand, within GFF656at 708.109 kb on - strand, within GFF656at 708.217 kb on + strand, within GFF656at 708.217 kb on + strand, within GFF656at 708.217 kb on + strand, within GFF656at 708.217 kb on + strand, within GFF656at 708.217 kb on + strand, within GFF656at 708.217 kb on + strand, within GFF656at 708.217 kb on + strand, within GFF656at 708.217 kb on + strand, within GFF656at 708.217 kb on + strand, within GFF656at 708.218 kb on - strand, within GFF656at 708.218 kb on - strand, within GFF656at 708.218 kb on - strand, within GFF656at 708.218 kb on - strand, within GFF656at 708.218 kb on - strand, within GFF656at 708.218 kb on - strand, within GFF656at 708.218 kb on - strand, within GFF656at 708.394 kb on + strand, within GFF656at 708.394 kb on + strand, within GFF656at 708.394 kb on + strand, within GFF656at 708.395 kb on - strand, within GFF656at 708.395 kb on - strand, within GFF656at 708.643 kb on + strand, within GFF656at 708.643 kb on + strand, within GFF656at 708.643 kb on + strand, within GFF656at 708.643 kb on + strand, within GFF656at 708.643 kb on + strand, within GFF656at 708.644 kb on - strand, within GFF656at 708.644 kb on - strand, within GFF656at 708.644 kb on - strand, within GFF656at 708.644 kb on - strand, within GFF656at 708.644 kb on - strand, within GFF656at 708.644 kb on - strand, within GFF656at 708.644 kb on - strand, within GFF656at 708.644 kb on - strand, within GFF656at 708.753 kb on - strandat 708.949 kb on + strandat 709.117 kb on + strandat 709.118 kb on - strandat 709.118 kb on - strandat 709.118 kb on - strandat 709.364 kb on - strandat 709.429 kb on + strandat 709.470 kb on + strandat 709.471 kb on - strandat 709.518 kb on + strandat 709.518 kb on + strandat 709.518 kb on + strandat 709.519 kb on - strandat 709.519 kb on - strandat 709.553 kb on + strandat 709.554 kb on - strandat 709.554 kb on - strandat 709.554 kb on - strandat 709.554 kb on - strandat 709.631 kb on + strandat 709.631 kb on + strandat 709.789 kb on - strand, within GFF658

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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705,793 + GFF654 0.42 +1.4
705,793 + GFF654 0.42 +0.2
705,793 + GFF654 0.42 -0.8
705,793 + GFF654 0.42 -1.0
705,794 - GFF654 0.42 -1.5
705,794 - GFF654 0.42 -1.8
705,794 - GFF654 0.42 -2.4
705,794 - GFF654 0.42 -1.8
705,814 + GFF654 0.44 -1.4
705,815 - GFF654 0.45 -0.4
705,815 - GFF654 0.45 -1.8
705,815 - GFF654 0.45 -1.1
705,901 + GFF654 0.56 -0.6
705,901 + GFF654 0.56 -0.3
706,243 + -0.5
706,265 + +0.5
706,265 + -2.3
706,266 - -0.2
706,289 + -3.3
706,500 - GFF655 0.58 -2.0
706,500 - GFF655 0.58 +0.4
706,500 - GFF655 0.58 +1.1
706,562 + GFF655 0.73 -0.9
706,563 - GFF655 0.73 -1.9
706,563 - GFF655 0.73 +0.4
706,563 - GFF655 0.73 -1.7
706,563 - GFF655 0.73 +0.3
706,699 + +0.1
706,747 + -2.2
706,748 - +3.1
706,856 - -1.7
706,984 + GFF656 0.13 -0.4
706,984 + GFF656 0.13 +0.4
706,985 - GFF656 0.13 +0.8
706,996 + GFF656 0.14 -0.2
706,996 + GFF656 0.14 -1.4
706,996 + GFF656 0.14 +0.8
706,997 - GFF656 0.14 -2.1
706,997 - GFF656 0.14 +0.2
706,997 - GFF656 0.14 -3.8
706,997 - GFF656 0.14 -0.9
706,999 + GFF656 0.14 -0.2
706,999 + GFF656 0.14 +1.0
706,999 + GFF656 0.14 +0.8
706,999 + GFF656 0.14 -1.0
707,000 - GFF656 0.14 -2.1
707,000 - GFF656 0.14 -2.0
707,000 - GFF656 0.14 -1.8
707,188 + GFF656 0.22 -0.9
707,188 + GFF656 0.22 +0.1
707,188 + GFF656 0.22 +1.8
707,188 + GFF656 0.22 +0.8
707,189 - GFF656 0.22 +1.8
707,189 - GFF656 0.22 +1.3
707,189 - GFF656 0.22 -0.8
707,189 - GFF656 0.22 -0.2
707,189 - GFF656 0.22 -0.6
707,341 + GFF656 0.29 -1.0
707,342 - GFF656 0.29 -1.6
707,342 - GFF656 0.29 -0.3
707,342 - GFF656 0.29 -1.0
707,342 - GFF656 0.29 +0.7
707,353 + GFF656 0.30 +0.6
707,353 + GFF656 0.30 +0.8
707,353 + GFF656 0.30 -1.9
707,354 - GFF656 0.30 -1.4
707,392 + GFF656 0.31 -0.8
707,392 + GFF656 0.31 +0.5
707,392 + GFF656 0.31 -1.0
707,393 - GFF656 0.31 +0.8
707,431 + GFF656 0.33 +0.2
707,432 - GFF656 0.33 -0.3
707,548 + GFF656 0.38 -1.0
707,549 - GFF656 0.38 -0.8
707,549 - GFF656 0.38 +0.5
707,549 - GFF656 0.38 -0.5
707,563 + GFF656 0.39 +0.0
707,563 + GFF656 0.39 +0.8
707,563 + GFF656 0.39 -0.9
707,563 + GFF656 0.39 +0.8
707,564 - GFF656 0.39 -0.9
707,564 - GFF656 0.39 +0.3
707,564 - GFF656 0.39 -0.8
707,564 - GFF656 0.39 -0.2
707,564 - GFF656 0.39 -0.7
707,564 - GFF656 0.39 -1.5
707,564 - GFF656 0.39 +0.3
707,566 + GFF656 0.39 -2.0
707,710 + GFF656 0.45 -2.0
707,815 + GFF656 0.50 -2.4
707,815 + GFF656 0.50 -1.6
707,815 + GFF656 0.50 +0.2
707,815 + GFF656 0.50 +0.5
707,815 + GFF656 0.50 +0.7
707,815 + GFF656 0.50 +0.8
707,815 + GFF656 0.50 -0.2
707,816 - GFF656 0.50 -1.4
707,872 + GFF656 0.53 -4.0
707,874 - GFF656 0.53 -2.3
707,878 + GFF656 0.53 -1.6
707,878 + GFF656 0.53 -0.1
707,878 + GFF656 0.53 -0.8
707,878 + GFF656 0.53 -1.4
707,878 + GFF656 0.53 -0.8
707,879 - GFF656 0.53 +0.5
707,879 - GFF656 0.53 +0.7
707,882 - GFF656 0.53 +0.3
707,882 - GFF656 0.53 -0.4
707,882 - GFF656 0.53 -0.1
707,882 - GFF656 0.53 -2.1
707,884 + GFF656 0.53 +1.1
707,884 + GFF656 0.53 -1.4
707,885 - GFF656 0.53 +0.1
707,885 - GFF656 0.53 -2.1
707,885 - GFF656 0.53 -1.5
708,040 + GFF656 0.60 -0.5
708,040 + GFF656 0.60 +0.3
708,040 + GFF656 0.60 +2.8
708,041 - GFF656 0.60 -0.2
708,041 - GFF656 0.60 -0.1
708,041 - GFF656 0.60 +0.3
708,041 - GFF656 0.60 +1.8
708,083 - GFF656 0.62 -0.6
708,108 + GFF656 0.63 -0.3
708,109 - GFF656 0.63 -1.0
708,217 + GFF656 0.68 -0.4
708,217 + GFF656 0.68 -2.5
708,217 + GFF656 0.68 -2.6
708,217 + GFF656 0.68 -0.6
708,217 + GFF656 0.68 +1.3
708,217 + GFF656 0.68 -2.0
708,217 + GFF656 0.68 -1.1
708,217 + GFF656 0.68 -1.5
708,217 + GFF656 0.68 -0.5
708,218 - GFF656 0.68 +0.4
708,218 - GFF656 0.68 +1.5
708,218 - GFF656 0.68 -0.8
708,218 - GFF656 0.68 +0.6
708,218 - GFF656 0.68 -0.2
708,218 - GFF656 0.68 +0.1
708,218 - GFF656 0.68 +1.6
708,394 + GFF656 0.76 +0.2
708,394 + GFF656 0.76 +0.2
708,394 + GFF656 0.76 -2.1
708,395 - GFF656 0.76 +0.7
708,395 - GFF656 0.76 -3.3
708,643 + GFF656 0.87 +1.4
708,643 + GFF656 0.87 -0.7
708,643 + GFF656 0.87 -2.1
708,643 + GFF656 0.87 +0.2
708,643 + GFF656 0.87 -0.5
708,644 - GFF656 0.87 +0.0
708,644 - GFF656 0.87 -0.9
708,644 - GFF656 0.87 -0.3
708,644 - GFF656 0.87 -1.5
708,644 - GFF656 0.87 -0.2
708,644 - GFF656 0.87 -1.0
708,644 - GFF656 0.87 -0.2
708,644 - GFF656 0.87 -0.5
708,753 - +1.8
708,949 + -2.1
709,117 + +0.4
709,118 - +0.5
709,118 - -1.6
709,118 - +2.0
709,364 - -1.0
709,429 + +0.2
709,470 + -1.4
709,471 - +0.2
709,518 + +1.4
709,518 + -0.5
709,518 + +0.3
709,519 - -2.5
709,519 - +0.4
709,553 + +0.8
709,554 - -0.2
709,554 - -0.2
709,554 - -0.1
709,554 - -1.9
709,631 + +1.0
709,631 + -2.4
709,789 - GFF658 0.16 +1.1

Or see this region's nucleotide sequence