Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6498 and GFF6499 are separated by 5 nucleotides GFF6499 and GFF6500 are separated by 122 nucleotides GFF6500 and GFF6501 are separated by 52 nucleotides
GFF6498 - FIG00348192: hypothetical protein, at 74,771 to 76,363
GFF6498
GFF6499 - hypothetical protein, at 76,369 to 76,848
GFF6499
GFF6500 - 2-hydroxychromene-2-carboxylate isomerase/DsbA-like thioredoxin domain, at 76,971 to 77,657
GFF6500
GFF6501 - Uncharacterized MFS-type transporter, at 77,710 to 79,119
GFF6501
Position (kb) 76
77 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 75.447 kb on + strand, within GFF6498 at 75.447 kb on + strand, within GFF6498 at 75.448 kb on - strand, within GFF6498 at 75.448 kb on - strand, within GFF6498 at 75.492 kb on + strand, within GFF6498 at 75.492 kb on + strand, within GFF6498 at 75.492 kb on + strand, within GFF6498 at 75.493 kb on - strand, within GFF6498 at 75.493 kb on - strand, within GFF6498 at 75.652 kb on - strand, within GFF6498 at 75.783 kb on + strand, within GFF6498 at 75.945 kb on + strand, within GFF6498 at 75.945 kb on + strand, within GFF6498 at 75.946 kb on - strand, within GFF6498 at 75.946 kb on - strand, within GFF6498 at 75.946 kb on - strand, within GFF6498 at 76.748 kb on + strand, within GFF6499 at 76.749 kb on - strand, within GFF6499 at 76.767 kb on - strand, within GFF6499 at 76.832 kb on - strand at 76.956 kb on + strand at 76.967 kb on + strand at 76.967 kb on + strand at 76.967 kb on + strand at 76.967 kb on + strand at 76.968 kb on - strand at 77.113 kb on + strand, within GFF6500 at 77.113 kb on + strand, within GFF6500 at 77.113 kb on + strand, within GFF6500 at 77.113 kb on + strand, within GFF6500 at 77.114 kb on - strand, within GFF6500 at 77.114 kb on - strand, within GFF6500 at 77.114 kb on - strand, within GFF6500 at 77.114 kb on - strand, within GFF6500 at 77.114 kb on - strand, within GFF6500 at 77.114 kb on - strand, within GFF6500 at 77.114 kb on - strand, within GFF6500 at 77.114 kb on - strand, within GFF6500 at 77.254 kb on + strand, within GFF6500 at 77.254 kb on + strand, within GFF6500 at 77.255 kb on - strand, within GFF6500 at 77.347 kb on + strand, within GFF6500 at 77.347 kb on + strand, within GFF6500 at 77.347 kb on + strand, within GFF6500 at 77.347 kb on + strand, within GFF6500 at 77.450 kb on - strand, within GFF6500 at 77.450 kb on - strand, within GFF6500 at 77.768 kb on + strand at 77.769 kb on - strand at 77.769 kb on - strand at 77.769 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 75,447 + GFF6498 0.42 -0.9 75,447 + GFF6498 0.42 +0.5 75,448 - GFF6498 0.42 +0.3 75,448 - GFF6498 0.42 +0.1 75,492 + GFF6498 0.45 -2.5 75,492 + GFF6498 0.45 -0.3 75,492 + GFF6498 0.45 -3.2 75,493 - GFF6498 0.45 -0.2 75,493 - GFF6498 0.45 -0.6 75,652 - GFF6498 0.55 +1.6 75,783 + GFF6498 0.64 -0.7 75,945 + GFF6498 0.74 +3.5 75,945 + GFF6498 0.74 -1.8 75,946 - GFF6498 0.74 +0.8 75,946 - GFF6498 0.74 -1.3 75,946 - GFF6498 0.74 +1.1 76,748 + GFF6499 0.79 -1.4 76,749 - GFF6499 0.79 -0.1 76,767 - GFF6499 0.83 -1.6 76,832 - -1.5 76,956 + -0.5 76,967 + -0.9 76,967 + -0.9 76,967 + -0.1 76,967 + +0.1 76,968 - -0.8 77,113 + GFF6500 0.21 +1.5 77,113 + GFF6500 0.21 -2.1 77,113 + GFF6500 0.21 -1.6 77,113 + GFF6500 0.21 -1.4 77,114 - GFF6500 0.21 +0.1 77,114 - GFF6500 0.21 +0.2 77,114 - GFF6500 0.21 -1.6 77,114 - GFF6500 0.21 +1.2 77,114 - GFF6500 0.21 -0.1 77,114 - GFF6500 0.21 -1.6 77,114 - GFF6500 0.21 -2.3 77,114 - GFF6500 0.21 -0.1 77,254 + GFF6500 0.41 +0.4 77,254 + GFF6500 0.41 +1.1 77,255 - GFF6500 0.41 +1.5 77,347 + GFF6500 0.55 +0.5 77,347 + GFF6500 0.55 -2.5 77,347 + GFF6500 0.55 -0.2 77,347 + GFF6500 0.55 -0.3 77,450 - GFF6500 0.70 -0.8 77,450 - GFF6500 0.70 -0.6 77,768 + -2.4 77,769 - -1.5 77,769 - +1.7 77,769 - +0.4
Or see this region's nucleotide sequence