Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6467 and GFF6468 are separated by 44 nucleotides GFF6468 and GFF6469 overlap by 4 nucleotides GFF6469 and GFF6470 overlap by 4 nucleotides
GFF6467 - Nucleoside-diphosphate-sugar epimerases, at 44,198 to 45,217
GFF6467
GFF6468 - TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein, at 45,262 to 46,230
GFF6468
GFF6469 - TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter, at 46,227 to 46,721
GFF6469
GFF6470 - TRAP-type C4-dicarboxylate transport system, large permease component, at 46,718 to 47,995
GFF6470
Position (kb) 45
46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 44.637 kb on - strand, within GFF6467 at 44.670 kb on - strand, within GFF6467 at 44.670 kb on - strand, within GFF6467 at 44.670 kb on - strand, within GFF6467 at 45.170 kb on + strand at 45.170 kb on + strand at 45.171 kb on - strand at 45.171 kb on - strand at 45.171 kb on - strand at 45.215 kb on + strand at 45.215 kb on + strand at 45.215 kb on + strand at 45.215 kb on + strand at 45.215 kb on + strand at 45.215 kb on + strand at 45.215 kb on + strand at 45.216 kb on - strand at 45.216 kb on - strand at 45.216 kb on - strand at 45.216 kb on - strand at 45.216 kb on - strand at 45.427 kb on + strand, within GFF6468 at 45.428 kb on - strand, within GFF6468 at 45.428 kb on - strand, within GFF6468 at 45.428 kb on - strand, within GFF6468 at 45.428 kb on - strand, within GFF6468 at 45.445 kb on + strand, within GFF6468 at 45.445 kb on + strand, within GFF6468 at 45.445 kb on + strand, within GFF6468 at 45.445 kb on + strand, within GFF6468 at 45.445 kb on + strand, within GFF6468 at 45.445 kb on + strand, within GFF6468 at 45.790 kb on + strand, within GFF6468 at 45.791 kb on - strand, within GFF6468 at 45.791 kb on - strand, within GFF6468 at 46.222 kb on + strand at 46.223 kb on - strand at 46.223 kb on - strand at 46.405 kb on + strand, within GFF6469 at 46.405 kb on + strand, within GFF6469 at 46.405 kb on + strand, within GFF6469 at 46.405 kb on + strand, within GFF6469 at 46.405 kb on + strand, within GFF6469 at 46.405 kb on + strand, within GFF6469 at 46.405 kb on + strand, within GFF6469 at 46.405 kb on + strand, within GFF6469 at 46.406 kb on - strand, within GFF6469 at 46.406 kb on - strand, within GFF6469 at 46.406 kb on - strand, within GFF6469 at 46.406 kb on - strand, within GFF6469 at 46.465 kb on - strand, within GFF6469 at 46.563 kb on + strand, within GFF6469 at 46.626 kb on + strand, within GFF6469 at 46.626 kb on + strand, within GFF6469 at 46.680 kb on + strand at 46.681 kb on - strand at 46.681 kb on - strand at 46.847 kb on + strand, within GFF6470 at 46.899 kb on + strand, within GFF6470 at 46.899 kb on + strand, within GFF6470 at 46.899 kb on + strand, within GFF6470 at 46.900 kb on - strand, within GFF6470 at 46.900 kb on - strand, within GFF6470 at 47.115 kb on - strand, within GFF6470 at 47.134 kb on + strand, within GFF6470 at 47.135 kb on - strand, within GFF6470 at 47.135 kb on - strand, within GFF6470 at 47.135 kb on - strand, within GFF6470 at 47.183 kb on + strand, within GFF6470 at 47.187 kb on - strand, within GFF6470
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 44,637 - GFF6467 0.43 -1.7 44,670 - GFF6467 0.46 -1.6 44,670 - GFF6467 0.46 +1.6 44,670 - GFF6467 0.46 -1.2 45,170 + +1.2 45,170 + -1.1 45,171 - -1.4 45,171 - +1.2 45,171 - -2.1 45,215 + -0.2 45,215 + -0.6 45,215 + -1.7 45,215 + +1.4 45,215 + -2.3 45,215 + +0.8 45,215 + -0.9 45,216 - -0.3 45,216 - -2.3 45,216 - +0.4 45,216 - +0.4 45,216 - +0.1 45,427 + GFF6468 0.17 +2.1 45,428 - GFF6468 0.17 +2.9 45,428 - GFF6468 0.17 -1.6 45,428 - GFF6468 0.17 +1.8 45,428 - GFF6468 0.17 -1.9 45,445 + GFF6468 0.19 +0.5 45,445 + GFF6468 0.19 -2.4 45,445 + GFF6468 0.19 +0.3 45,445 + GFF6468 0.19 -0.2 45,445 + GFF6468 0.19 +1.7 45,445 + GFF6468 0.19 +2.1 45,790 + GFF6468 0.54 +0.8 45,791 - GFF6468 0.55 -0.9 45,791 - GFF6468 0.55 +0.1 46,222 + -1.2 46,223 - +0.1 46,223 - -0.8 46,405 + GFF6469 0.36 +0.9 46,405 + GFF6469 0.36 -1.7 46,405 + GFF6469 0.36 -0.4 46,405 + GFF6469 0.36 -1.3 46,405 + GFF6469 0.36 -0.8 46,405 + GFF6469 0.36 +0.6 46,405 + GFF6469 0.36 +1.4 46,405 + GFF6469 0.36 -1.2 46,406 - GFF6469 0.36 -0.5 46,406 - GFF6469 0.36 -1.1 46,406 - GFF6469 0.36 -3.6 46,406 - GFF6469 0.36 -2.2 46,465 - GFF6469 0.48 -1.0 46,563 + GFF6469 0.68 -0.0 46,626 + GFF6469 0.81 -0.2 46,626 + GFF6469 0.81 -1.6 46,680 + -0.5 46,681 - -2.4 46,681 - +0.6 46,847 + GFF6470 0.10 -2.0 46,899 + GFF6470 0.14 -0.6 46,899 + GFF6470 0.14 +1.1 46,899 + GFF6470 0.14 -1.4 46,900 - GFF6470 0.14 -1.1 46,900 - GFF6470 0.14 -1.4 47,115 - GFF6470 0.31 +0.2 47,134 + GFF6470 0.33 -1.0 47,135 - GFF6470 0.33 +1.4 47,135 - GFF6470 0.33 +0.2 47,135 - GFF6470 0.33 -1.7 47,183 + GFF6470 0.36 -0.5 47,187 - GFF6470 0.37 +0.5
Or see this region's nucleotide sequence