Strain Fitness in Variovorax sp. SCN45 around GFF6462

Experiment: Community=guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6460 and GFF6461 are separated by 14 nucleotidesGFF6461 and GFF6462 overlap by 4 nucleotidesGFF6462 and GFF6463 are separated by 11 nucleotidesGFF6463 and GFF6464 are separated by 141 nucleotides GFF6460 - Sensor protein BasS/PmrB (activates BasR/PmrA), at 37,377 to 38,732 GFF6460 GFF6461 - Thioesterase superfamily, at 38,747 to 39,169 GFF6461 GFF6462 - Integral membrane protein, at 39,166 to 40,065 GFF6462 GFF6463 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 40,077 to 40,859 GFF6463 GFF6464 - Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1), at 41,001 to 42,698 GFF6464 Position (kb) 39 40 41Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 38.916 kb on + strand, within GFF6461at 38.916 kb on + strand, within GFF6461at 38.916 kb on + strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.943 kb on + strand, within GFF6461at 39.066 kb on + strand, within GFF6461at 39.066 kb on + strand, within GFF6461at 39.066 kb on + strand, within GFF6461at 39.067 kb on - strand, within GFF6461at 39.067 kb on - strand, within GFF6461at 39.067 kb on - strand, within GFF6461at 39.132 kb on + strandat 39.133 kb on - strandat 39.133 kb on - strandat 39.266 kb on + strand, within GFF6462at 39.266 kb on + strand, within GFF6462at 39.266 kb on + strand, within GFF6462at 39.266 kb on + strand, within GFF6462at 39.266 kb on + strand, within GFF6462at 39.267 kb on - strand, within GFF6462at 39.267 kb on - strand, within GFF6462at 39.563 kb on + strand, within GFF6462at 39.564 kb on - strand, within GFF6462at 39.564 kb on - strand, within GFF6462at 39.564 kb on - strand, within GFF6462at 39.564 kb on - strand, within GFF6462at 39.833 kb on + strand, within GFF6462at 39.833 kb on + strand, within GFF6462at 39.833 kb on + strand, within GFF6462at 39.834 kb on - strand, within GFF6462at 39.834 kb on - strand, within GFF6462at 39.834 kb on - strand, within GFF6462at 39.836 kb on + strand, within GFF6462at 39.837 kb on - strand, within GFF6462at 40.264 kb on + strand, within GFF6463at 40.264 kb on + strand, within GFF6463at 40.360 kb on + strand, within GFF6463at 40.360 kb on + strand, within GFF6463at 40.361 kb on - strand, within GFF6463at 40.361 kb on - strand, within GFF6463at 40.361 kb on - strand, within GFF6463at 40.361 kb on - strand, within GFF6463at 40.361 kb on - strand, within GFF6463at 40.361 kb on - strand, within GFF6463at 40.407 kb on - strand, within GFF6463at 40.407 kb on - strand, within GFF6463at 40.429 kb on + strand, within GFF6463at 40.429 kb on + strand, within GFF6463at 40.429 kb on + strand, within GFF6463at 40.429 kb on + strand, within GFF6463at 40.429 kb on + strand, within GFF6463at 40.429 kb on + strand, within GFF6463at 40.430 kb on - strand, within GFF6463at 40.430 kb on - strand, within GFF6463at 40.430 kb on - strand, within GFF6463at 40.430 kb on - strand, within GFF6463at 40.430 kb on - strand, within GFF6463at 40.430 kb on - strand, within GFF6463at 40.430 kb on - strand, within GFF6463at 40.430 kb on - strand, within GFF6463at 40.525 kb on + strand, within GFF6463at 40.526 kb on - strand, within GFF6463at 40.526 kb on - strand, within GFF6463at 40.526 kb on - strand, within GFF6463at 40.852 kb on + strandat 40.852 kb on + strandat 40.852 kb on + strandat 40.852 kb on + strandat 40.852 kb on + strandat 40.852 kb on + strandat 40.852 kb on + strandat 40.852 kb on + strandat 40.852 kb on + strandat 40.852 kb on + strandat 40.852 kb on + strandat 40.853 kb on - strandat 40.853 kb on - strandat 40.853 kb on - strandat 40.853 kb on - strandat 40.853 kb on - strandat 40.940 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
remove
38,916 + GFF6461 0.40 -0.4
38,916 + GFF6461 0.40 -0.2
38,916 + GFF6461 0.40 +1.0
38,917 - GFF6461 0.40 -0.3
38,917 - GFF6461 0.40 -1.3
38,917 - GFF6461 0.40 +0.3
38,917 - GFF6461 0.40 -1.2
38,917 - GFF6461 0.40 +0.7
38,917 - GFF6461 0.40 -2.6
38,917 - GFF6461 0.40 -1.1
38,917 - GFF6461 0.40 +0.2
38,917 - GFF6461 0.40 -0.6
38,917 - GFF6461 0.40 -0.7
38,917 - GFF6461 0.40 -1.1
38,917 - GFF6461 0.40 -1.0
38,917 - GFF6461 0.40 -0.3
38,917 - GFF6461 0.40 +0.1
38,917 - GFF6461 0.40 +0.4
38,917 - GFF6461 0.40 +1.4
38,943 + GFF6461 0.46 -1.2
39,066 + GFF6461 0.75 +1.1
39,066 + GFF6461 0.75 -1.0
39,066 + GFF6461 0.75 -0.7
39,067 - GFF6461 0.76 -0.5
39,067 - GFF6461 0.76 -2.0
39,067 - GFF6461 0.76 +1.1
39,132 + +2.7
39,133 - +0.1
39,133 - -0.2
39,266 + GFF6462 0.11 +0.4
39,266 + GFF6462 0.11 +0.3
39,266 + GFF6462 0.11 +0.5
39,266 + GFF6462 0.11 -3.2
39,266 + GFF6462 0.11 +1.2
39,267 - GFF6462 0.11 -0.0
39,267 - GFF6462 0.11 +0.8
39,563 + GFF6462 0.44 +0.0
39,564 - GFF6462 0.44 +0.4
39,564 - GFF6462 0.44 -0.7
39,564 - GFF6462 0.44 +1.0
39,564 - GFF6462 0.44 -1.6
39,833 + GFF6462 0.74 +0.8
39,833 + GFF6462 0.74 +1.1
39,833 + GFF6462 0.74 +0.1
39,834 - GFF6462 0.74 +0.6
39,834 - GFF6462 0.74 -1.4
39,834 - GFF6462 0.74 +0.3
39,836 + GFF6462 0.74 +0.8
39,837 - GFF6462 0.75 -1.7
40,264 + GFF6463 0.24 +0.6
40,264 + GFF6463 0.24 +0.4
40,360 + GFF6463 0.36 +1.6
40,360 + GFF6463 0.36 +0.1
40,361 - GFF6463 0.36 -2.4
40,361 - GFF6463 0.36 -1.2
40,361 - GFF6463 0.36 -1.1
40,361 - GFF6463 0.36 -1.2
40,361 - GFF6463 0.36 -0.6
40,361 - GFF6463 0.36 -1.2
40,407 - GFF6463 0.42 +0.9
40,407 - GFF6463 0.42 +0.9
40,429 + GFF6463 0.45 +1.7
40,429 + GFF6463 0.45 -1.9
40,429 + GFF6463 0.45 -1.5
40,429 + GFF6463 0.45 +0.5
40,429 + GFF6463 0.45 +1.8
40,429 + GFF6463 0.45 -0.9
40,430 - GFF6463 0.45 -0.0
40,430 - GFF6463 0.45 -0.9
40,430 - GFF6463 0.45 +0.8
40,430 - GFF6463 0.45 -1.9
40,430 - GFF6463 0.45 -0.2
40,430 - GFF6463 0.45 +2.7
40,430 - GFF6463 0.45 -1.6
40,430 - GFF6463 0.45 -1.9
40,525 + GFF6463 0.57 -0.9
40,526 - GFF6463 0.57 -0.6
40,526 - GFF6463 0.57 -2.8
40,526 - GFF6463 0.57 -1.2
40,852 + +0.3
40,852 + -2.8
40,852 + -0.9
40,852 + +0.8
40,852 + +0.4
40,852 + -0.2
40,852 + +0.1
40,852 + -1.1
40,852 + -0.5
40,852 + -0.9
40,852 + +1.4
40,853 - +0.4
40,853 - -1.8
40,853 - +0.5
40,853 - +2.0
40,853 - -2.8
40,940 + -1.0

Or see this region's nucleotide sequence