Strain Fitness in Variovorax sp. SCN45 around GFF6440

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
16,372	-		GFF6439	0.31	-0.4
16,576	-		GFF6439	0.53	-0.8
17,007	+				+0.5
17,062	+		GFF6440	0.20	-0.6
17,062	+		GFF6440	0.20	-0.8
17,062	+		GFF6440	0.20	+0.1
17,296	+				+0.3
17,300	+				+0.2
17,300	+				-1.1
17,300	+				-0.7
17,300	+				+2.2
17,300	+				-1.2
17,300	+				+3.1
17,301	-				-0.5
17,301	-				+1.1
17,301	-				-2.2
17,301	-				-2.4
17,301	-				-1.4
17,301	-				+0.1
17,301	-				+1.4
17,301	-				-0.5
17,301	-				-0.9
17,470	+		GFF6441	0.46	-0.7
17,471	-		GFF6441	0.47	+0.4
17,539	+		GFF6441	0.65	-1.0
17,700	+				-2.4
17,730	+				-2.1
17,731	-				+0.8
17,781	+				-0.3
17,817	+				-2.8
17,817	-				-0.9
17,818	-				-0.7
17,818	-				+0.1
17,911	-		GFF6442	0.16	+0.9
17,911	-		GFF6442	0.16	+0.1
18,042	+		GFF6442	0.24	-1.6
18,042	+		GFF6442	0.24	+1.1
18,043	-		GFF6442	0.24	-2.0
18,043	-		GFF6442	0.24	-3.3
18,043	-		GFF6442	0.24	-0.7
18,130	-		GFF6442	0.30	-3.0
18,130	-		GFF6442	0.30	-0.7