Strain Fitness in Variovorax sp. SCN45 around GFF6411

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6409 and GFF6410 are separated by 61 nucleotidesGFF6410 and GFF6411 are separated by 11 nucleotidesGFF6411 and GFF6412 overlap by 4 nucleotidesGFF6412 and GFF6413 are separated by 13 nucleotides GFF6409 - Histidine ammonia-lyase (EC 4.3.1.3), at 83,649 to 85,208 GFF6409 GFF6410 - Histidine utilization repressor, at 85,270 to 86,007 GFF6410 GFF6411 - Histidine ABC transporter, ATP-binding protein, at 86,019 to 86,801 GFF6411 GFF6412 - Histidine ABC transporter, permease protein, at 86,798 to 87,640 GFF6412 GFF6413 - Histidine ABC transporter, substrate-binding protein, at 87,654 to 88,625 GFF6413 Position (kb) 86 87Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 85.021 kb on + strand, within GFF6409at 85.221 kb on - strandat 85.221 kb on - strandat 85.222 kb on + strandat 85.223 kb on - strandat 85.223 kb on - strandat 85.223 kb on - strandat 85.246 kb on + strandat 85.246 kb on + strandat 85.246 kb on + strandat 85.246 kb on + strandat 85.247 kb on - strandat 85.247 kb on - strandat 85.247 kb on - strandat 85.247 kb on - strandat 85.271 kb on + strandat 85.298 kb on + strandat 85.319 kb on + strandat 85.319 kb on + strandat 85.320 kb on - strandat 85.450 kb on + strand, within GFF6410at 85.450 kb on + strand, within GFF6410at 85.502 kb on + strand, within GFF6410at 85.502 kb on + strand, within GFF6410at 85.502 kb on + strand, within GFF6410at 85.502 kb on + strand, within GFF6410at 85.502 kb on + strand, within GFF6410at 85.503 kb on - strand, within GFF6410at 85.503 kb on - strand, within GFF6410at 85.503 kb on - strand, within GFF6410at 85.503 kb on - strand, within GFF6410at 85.503 kb on - strand, within GFF6410at 85.541 kb on + strand, within GFF6410at 85.541 kb on + strand, within GFF6410at 85.542 kb on - strand, within GFF6410at 85.568 kb on + strand, within GFF6410at 85.568 kb on + strand, within GFF6410at 85.568 kb on + strand, within GFF6410at 85.568 kb on + strand, within GFF6410at 85.569 kb on - strand, within GFF6410at 85.569 kb on - strand, within GFF6410at 85.569 kb on - strand, within GFF6410at 85.569 kb on - strand, within GFF6410at 85.712 kb on + strand, within GFF6410at 85.712 kb on + strand, within GFF6410at 85.712 kb on + strand, within GFF6410at 85.713 kb on - strand, within GFF6410at 85.976 kb on + strandat 86.110 kb on + strand, within GFF6411at 86.110 kb on + strand, within GFF6411at 86.110 kb on + strand, within GFF6411at 86.110 kb on + strand, within GFF6411at 86.110 kb on + strand, within GFF6411at 86.111 kb on - strand, within GFF6411at 86.111 kb on - strand, within GFF6411at 86.111 kb on - strand, within GFF6411at 86.111 kb on - strand, within GFF6411at 86.111 kb on - strand, within GFF6411at 86.111 kb on - strand, within GFF6411at 86.542 kb on + strand, within GFF6411at 86.542 kb on + strand, within GFF6411at 86.542 kb on + strand, within GFF6411at 86.542 kb on + strand, within GFF6411at 86.542 kb on + strand, within GFF6411at 86.543 kb on - strand, within GFF6411at 86.543 kb on - strand, within GFF6411at 86.543 kb on - strand, within GFF6411at 86.982 kb on + strand, within GFF6412at 86.982 kb on + strand, within GFF6412at 86.982 kb on + strand, within GFF6412at 86.982 kb on + strand, within GFF6412at 86.982 kb on + strand, within GFF6412at 86.982 kb on + strand, within GFF6412at 86.982 kb on + strand, within GFF6412at 86.982 kb on + strand, within GFF6412at 86.983 kb on - strand, within GFF6412at 86.983 kb on - strand, within GFF6412at 86.983 kb on - strand, within GFF6412at 86.983 kb on - strand, within GFF6412at 86.983 kb on - strand, within GFF6412at 86.983 kb on - strand, within GFF6412at 87.090 kb on + strand, within GFF6412at 87.090 kb on + strand, within GFF6412at 87.090 kb on + strand, within GFF6412at 87.090 kb on + strand, within GFF6412at 87.171 kb on + strand, within GFF6412at 87.249 kb on + strand, within GFF6412at 87.249 kb on + strand, within GFF6412at 87.308 kb on - strand, within GFF6412at 87.308 kb on - strand, within GFF6412at 87.399 kb on + strand, within GFF6412at 87.400 kb on - strand, within GFF6412at 87.497 kb on + strand, within GFF6412at 87.497 kb on + strand, within GFF6412at 87.497 kb on + strand, within GFF6412at 87.497 kb on + strand, within GFF6412at 87.497 kb on + strand, within GFF6412at 87.498 kb on - strand, within GFF6412at 87.498 kb on - strand, within GFF6412at 87.498 kb on - strand, within GFF6412at 87.498 kb on - strand, within GFF6412at 87.498 kb on - strand, within GFF6412at 87.655 kb on + strandat 87.655 kb on + strandat 87.655 kb on + strandat 87.655 kb on + strandat 87.655 kb on + strandat 87.655 kb on + strandat 87.655 kb on + strandat 87.656 kb on - strandat 87.656 kb on - strandat 87.656 kb on - strandat 87.656 kb on - strandat 87.656 kb on - strandat 87.656 kb on - strandat 87.656 kb on - strandat 87.656 kb on - strandat 87.656 kb on - strandat 87.656 kb on - strandat 87.656 kb on - strandat 87.656 kb on - strandat 87.656 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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85,021 + GFF6409 0.88 -0.0
85,221 - -1.3
85,221 - +0.7
85,222 + -1.6
85,223 - +2.9
85,223 - +1.0
85,223 - -0.0
85,246 + +0.1
85,246 + -2.2
85,246 + +3.0
85,246 + -0.6
85,247 - -0.3
85,247 - -2.4
85,247 - +1.9
85,247 - +0.8
85,271 + +0.6
85,298 + -0.0
85,319 + -2.2
85,319 + +1.4
85,320 - -1.9
85,450 + GFF6410 0.24 -2.3
85,450 + GFF6410 0.24 +0.2
85,502 + GFF6410 0.31 +0.2
85,502 + GFF6410 0.31 -1.2
85,502 + GFF6410 0.31 -1.1
85,502 + GFF6410 0.31 -0.9
85,502 + GFF6410 0.31 -1.0
85,503 - GFF6410 0.32 -1.9
85,503 - GFF6410 0.32 -0.2
85,503 - GFF6410 0.32 -2.4
85,503 - GFF6410 0.32 -3.0
85,503 - GFF6410 0.32 -0.9
85,541 + GFF6410 0.37 -1.2
85,541 + GFF6410 0.37 +0.2
85,542 - GFF6410 0.37 -1.5
85,568 + GFF6410 0.40 +3.3
85,568 + GFF6410 0.40 -1.6
85,568 + GFF6410 0.40 +0.9
85,568 + GFF6410 0.40 -0.3
85,569 - GFF6410 0.41 -3.0
85,569 - GFF6410 0.41 +0.1
85,569 - GFF6410 0.41 -0.6
85,569 - GFF6410 0.41 -0.3
85,712 + GFF6410 0.60 +0.1
85,712 + GFF6410 0.60 -0.7
85,712 + GFF6410 0.60 -1.0
85,713 - GFF6410 0.60 +0.4
85,976 + +1.0
86,110 + GFF6411 0.12 +0.6
86,110 + GFF6411 0.12 +0.2
86,110 + GFF6411 0.12 +2.2
86,110 + GFF6411 0.12 +0.5
86,110 + GFF6411 0.12 +2.8
86,111 - GFF6411 0.12 -0.3
86,111 - GFF6411 0.12 -0.2
86,111 - GFF6411 0.12 +0.6
86,111 - GFF6411 0.12 +1.1
86,111 - GFF6411 0.12 +1.3
86,111 - GFF6411 0.12 +0.6
86,542 + GFF6411 0.67 -1.1
86,542 + GFF6411 0.67 -0.9
86,542 + GFF6411 0.67 +1.0
86,542 + GFF6411 0.67 -1.0
86,542 + GFF6411 0.67 +0.1
86,543 - GFF6411 0.67 +0.6
86,543 - GFF6411 0.67 -0.1
86,543 - GFF6411 0.67 +0.8
86,982 + GFF6412 0.22 -2.1
86,982 + GFF6412 0.22 -2.6
86,982 + GFF6412 0.22 +0.6
86,982 + GFF6412 0.22 -1.6
86,982 + GFF6412 0.22 -0.8
86,982 + GFF6412 0.22 -0.2
86,982 + GFF6412 0.22 +1.4
86,982 + GFF6412 0.22 -0.2
86,983 - GFF6412 0.22 +1.2
86,983 - GFF6412 0.22 -0.3
86,983 - GFF6412 0.22 -2.3
86,983 - GFF6412 0.22 -0.2
86,983 - GFF6412 0.22 -1.4
86,983 - GFF6412 0.22 -1.1
87,090 + GFF6412 0.35 -2.9
87,090 + GFF6412 0.35 +1.2
87,090 + GFF6412 0.35 +1.0
87,090 + GFF6412 0.35 -0.2
87,171 + GFF6412 0.44 +1.4
87,249 + GFF6412 0.53 -1.5
87,249 + GFF6412 0.53 +0.8
87,308 - GFF6412 0.60 +0.4
87,308 - GFF6412 0.60 +2.4
87,399 + GFF6412 0.71 +1.5
87,400 - GFF6412 0.71 -0.2
87,497 + GFF6412 0.83 +1.0
87,497 + GFF6412 0.83 -0.5
87,497 + GFF6412 0.83 +1.2
87,497 + GFF6412 0.83 +1.4
87,497 + GFF6412 0.83 +0.8
87,498 - GFF6412 0.83 -2.2
87,498 - GFF6412 0.83 -1.1
87,498 - GFF6412 0.83 -1.2
87,498 - GFF6412 0.83 -2.4
87,498 - GFF6412 0.83 +1.2
87,655 + -0.0
87,655 + +0.4
87,655 + -0.4
87,655 + +2.6
87,655 + -0.5
87,655 + +1.8
87,655 + -1.6
87,656 - -0.2
87,656 - -1.9
87,656 - -0.4
87,656 - +1.0
87,656 - +1.4
87,656 - -0.0
87,656 - +0.2
87,656 - +0.1
87,656 - -1.0
87,656 - +0.2
87,656 - -1.0
87,656 - -0.2
87,656 - +1.6

Or see this region's nucleotide sequence