Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6381 and GFF6382 are separated by 81 nucleotides GFF6382 and GFF6383 are separated by 50 nucleotides GFF6383 and GFF6384 are separated by 41 nucleotides
GFF6381 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 52,726 to 54,657
GFF6381
GFF6382 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 54,739 to 55,944
GFF6382
GFF6383 - FIG00440100: hypothetical protein, at 55,995 to 56,579
GFF6383
GFF6384 - Peptide synthase, at 56,621 to 57,262
GFF6384
Position (kb) 54
55
56 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 53.921 kb on + strand, within GFF6381 at 53.921 kb on + strand, within GFF6381 at 53.921 kb on + strand, within GFF6381 at 54.225 kb on - strand, within GFF6381 at 54.383 kb on + strand, within GFF6381 at 54.383 kb on + strand, within GFF6381 at 54.501 kb on - strand at 54.501 kb on - strand at 54.509 kb on + strand at 54.509 kb on + strand at 54.509 kb on + strand at 54.510 kb on - strand at 54.510 kb on - strand at 54.510 kb on - strand at 54.510 kb on - strand at 54.510 kb on - strand at 54.510 kb on - strand at 54.510 kb on - strand at 54.803 kb on + strand at 54.809 kb on + strand at 54.857 kb on + strand at 54.893 kb on + strand, within GFF6382 at 55.010 kb on + strand, within GFF6382 at 55.011 kb on - strand, within GFF6382 at 55.011 kb on - strand, within GFF6382 at 55.038 kb on - strand, within GFF6382 at 55.059 kb on - strand, within GFF6382 at 55.101 kb on - strand, within GFF6382 at 55.160 kb on + strand, within GFF6382 at 55.398 kb on + strand, within GFF6382 at 55.424 kb on + strand, within GFF6382 at 55.425 kb on - strand, within GFF6382 at 55.425 kb on - strand, within GFF6382 at 55.500 kb on - strand, within GFF6382 at 55.500 kb on - strand, within GFF6382 at 55.520 kb on + strand, within GFF6382 at 55.521 kb on - strand, within GFF6382 at 55.521 kb on - strand, within GFF6382 at 55.521 kb on - strand, within GFF6382 at 55.526 kb on + strand, within GFF6382 at 55.526 kb on + strand, within GFF6382 at 55.527 kb on - strand, within GFF6382 at 55.527 kb on - strand, within GFF6382 at 55.527 kb on - strand, within GFF6382 at 55.527 kb on - strand, within GFF6382 at 55.527 kb on - strand, within GFF6382 at 55.527 kb on - strand, within GFF6382 at 55.527 kb on - strand, within GFF6382 at 55.580 kb on + strand, within GFF6382 at 55.805 kb on + strand, within GFF6382 at 55.806 kb on - strand, within GFF6382 at 55.835 kb on + strand at 55.835 kb on + strand at 55.835 kb on + strand at 55.836 kb on - strand at 55.836 kb on - strand at 55.983 kb on + strand at 55.983 kb on + strand at 55.983 kb on + strand at 55.984 kb on - strand at 55.984 kb on - strand at 56.450 kb on - strand, within GFF6383 at 56.781 kb on + strand, within GFF6384 at 56.781 kb on + strand, within GFF6384 at 56.781 kb on + strand, within GFF6384
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 53,921 + GFF6381 0.62 -1.5 53,921 + GFF6381 0.62 -1.5 53,921 + GFF6381 0.62 -0.5 54,225 - GFF6381 0.78 -1.6 54,383 + GFF6381 0.86 -0.6 54,383 + GFF6381 0.86 +0.6 54,501 - +1.9 54,501 - -1.5 54,509 + +1.3 54,509 + -0.8 54,509 + -1.0 54,510 - +1.4 54,510 - +0.4 54,510 - +0.0 54,510 - -0.8 54,510 - -2.0 54,510 - -2.6 54,510 - -0.8 54,803 + -2.1 54,809 + +1.0 54,857 + -1.1 54,893 + GFF6382 0.13 -0.3 55,010 + GFF6382 0.22 -0.7 55,011 - GFF6382 0.23 -2.7 55,011 - GFF6382 0.23 +0.2 55,038 - GFF6382 0.25 -0.7 55,059 - GFF6382 0.27 +0.3 55,101 - GFF6382 0.30 -0.8 55,160 + GFF6382 0.35 -3.3 55,398 + GFF6382 0.55 -0.9 55,424 + GFF6382 0.57 -0.3 55,425 - GFF6382 0.57 -1.5 55,425 - GFF6382 0.57 -4.1 55,500 - GFF6382 0.63 -0.5 55,500 - GFF6382 0.63 -1.8 55,520 + GFF6382 0.65 -0.4 55,521 - GFF6382 0.65 +0.8 55,521 - GFF6382 0.65 -1.6 55,521 - GFF6382 0.65 -0.9 55,526 + GFF6382 0.65 +0.5 55,526 + GFF6382 0.65 +0.6 55,527 - GFF6382 0.65 -1.5 55,527 - GFF6382 0.65 -0.3 55,527 - GFF6382 0.65 -0.4 55,527 - GFF6382 0.65 -0.0 55,527 - GFF6382 0.65 -1.8 55,527 - GFF6382 0.65 -1.3 55,527 - GFF6382 0.65 -1.9 55,580 + GFF6382 0.70 -0.8 55,805 + GFF6382 0.88 +0.6 55,806 - GFF6382 0.88 -1.3 55,835 + -1.6 55,835 + -1.9 55,835 + -0.9 55,836 - -1.2 55,836 - +0.0 55,983 + +1.6 55,983 + +0.4 55,983 + -0.4 55,984 - -0.1 55,984 - +1.6 56,450 - GFF6383 0.78 -0.3 56,781 + GFF6384 0.25 -0.9 56,781 + GFF6384 0.25 -0.6 56,781 + GFF6384 0.25 +0.5
Or see this region's nucleotide sequence