Strain Fitness in Variovorax sp. SCN45 around GFF6339

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
2,467	-		GFF6337	0.50	-1.2
2,688	+		GFF6337	0.76	-2.0
2,689	-		GFF6337	0.76	-0.3
2,689	-		GFF6337	0.76	-1.8
2,814	+				+0.2
2,814	+				-0.5
2,983	+		GFF6338	0.77	+1.6
2,983	+		GFF6338	0.77	-2.0
2,983	+		GFF6338	0.77	-0.8
2,983	+		GFF6338	0.77	+0.2
2,984	-		GFF6338	0.78	+0.1
2,984	-		GFF6338	0.78	-1.5
2,984	-		GFF6338	0.78	-1.6
3,006	+				-0.9
3,162	-				+0.8
3,162	-				-2.2
3,162	-				-0.0
3,359	+				+1.4
3,360	-				+1.8
3,385	+				-1.2
3,396	+				-1.9
3,397	-				+0.1
3,399	+				+1.1
3,399	+				-0.9
3,568	+				-0.3
3,568	+				-1.7
3,568	+				+2.4
3,569	-				+0.1
3,569	-				-0.4
3,569	-				+0.3
3,569	-				+1.6
3,569	-				+0.2
3,569	-				-0.0
3,635	-				-0.5
3,635	-				+0.7
3,635	-				-0.5
3,635	-				+0.6
3,635	-				+1.4
3,635	-				-2.4
3,639	+				-1.9
3,639	+				+0.1
3,640	-				+0.5
3,686	-				-2.5
3,737	+				+0.6
3,737	+				-0.6
3,738	-				-0.6
3,774	-				-0.4
3,780	-				+0.4
3,797	+				-0.3
3,797	+				+0.4
3,798	-				+1.6
3,896	-		GFF6340	0.58	-0.8
3,896	-		GFF6340	0.58	-0.5
4,069	+				-0.4
4,069	+				-1.4
4,070	-				+0.2
4,070	-				-0.2
4,116	-				-0.8
4,123	-				-2.3
4,200	+				-1.0
4,200	+				-1.1
4,201	-				-1.4
4,201	-				-1.2
4,201	-				-0.0
4,201	-				-1.5
4,201	-				-1.1
4,209	+				-1.0
4,253	+				-1.3
4,271	+				-0.6
4,272	-				-0.1
4,272	-				-1.8
4,390	+				-2.8
4,390	+				-1.6
4,391	-				-0.6
4,391	-				+0.5
4,439	-				-0.8