Strain Fitness in Variovorax sp. SCN45 around GFF6278

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
67,044	+				+0.9
67,045	-				-0.7
67,152	+		GFF6277	0.17	-1.2
67,152	+		GFF6277	0.17	-2.6
67,153	-		GFF6277	0.17	-1.1
67,153	-		GFF6277	0.17	-0.7
67,153	-		GFF6277	0.17	+0.5
67,153	-		GFF6277	0.17	+0.8
67,153	-		GFF6277	0.17	+0.7
67,153	-		GFF6277	0.17	-2.5
67,224	+		GFF6277	0.26	-0.5
67,224	+		GFF6277	0.26	-2.7
67,224	+		GFF6277	0.26	+0.8
67,224	+		GFF6277	0.26	+0.3
67,224	+		GFF6277	0.26	+0.4
67,224	+		GFF6277	0.26	-1.3
67,224	+		GFF6277	0.26	-1.0
67,225	-		GFF6277	0.26	-3.1
67,225	-		GFF6277	0.26	-2.2
67,225	-		GFF6277	0.26	+1.5
67,225	-		GFF6277	0.26	-3.0
67,356	+		GFF6277	0.43	+0.5
67,356	+		GFF6277	0.43	+1.6
67,356	+		GFF6277	0.43	+0.5
67,356	+		GFF6277	0.43	-1.4
67,356	+		GFF6277	0.43	-0.1
67,356	+		GFF6277	0.43	-1.6
67,356	+		GFF6277	0.43	-0.1
67,356	+		GFF6277	0.43	-0.5
67,356	+		GFF6277	0.43	-1.2
67,357	-		GFF6277	0.43	-1.9
67,357	-		GFF6277	0.43	+1.6
67,357	-		GFF6277	0.43	+0.8
67,357	-		GFF6277	0.43	-1.3
67,357	-		GFF6277	0.43	-0.9
67,357	-		GFF6277	0.43	-2.5
67,357	-		GFF6277	0.43	-0.1
67,357	-		GFF6277	0.43	+0.5
67,357	-		GFF6277	0.43	-2.5
67,357	-		GFF6277	0.43	+0.7
67,357	-		GFF6277	0.43	-0.1
67,357	-		GFF6277	0.43	+0.2
67,611	+		GFF6277	0.75	-2.2
67,826	+				-2.4
67,826	+				-0.9
67,826	+				+0.9
67,826	+				-1.5
67,826	+				+1.0
67,826	+				-0.3
67,826	+				+0.4
67,826	+				+1.3
67,826	+				-0.1
67,826	+				-0.5
67,826	+				-1.5
67,826	+				-0.5
67,826	+				-1.1
67,826	+				-0.3
67,826	+				+0.9
67,827	-				+0.9
67,827	-				+1.5
67,827	-				-0.4
67,827	-				+0.8
67,827	-				-0.4
67,827	-				-1.2
67,827	-				-2.0
67,827	-				+0.5
67,827	-				+1.2
67,827	-				+0.6
67,827	-				-1.2
67,827	-				-0.1
67,827	-				-0.0
67,827	-				-0.3
67,827	-				-2.1
67,827	-				-3.1
67,853	+				+0.7
67,853	+				-0.7
67,853	+				-1.4
67,853	+				+0.2
67,853	+				-1.0
67,853	+				+0.2
67,854	-				-0.8
67,854	-				-2.7
67,854	-				-2.5
67,854	-				+1.5
67,854	-				+0.6
67,859	+				-1.2
67,859	+				+0.2
67,859	+				+0.7
67,859	+				+0.2
67,859	+				-0.5
67,859	+				-0.3
67,860	-				-0.1
67,860	-				+1.5
67,860	-				-0.1
67,871	+				-1.6
67,871	+				-2.5
67,871	+				-0.8
67,871	+				-0.7
67,871	+				-0.7
67,871	+				-0.4
67,871	+				-0.2
67,872	-				-0.3
67,890	+				+1.1
67,890	+				+1.6
67,890	+				-0.1
67,890	+				-0.3
67,890	+				+0.5
67,890	+				+0.8
67,890	+				-2.2
67,890	+				-1.0
67,890	+				-2.9
67,890	+				-1.2
67,890	+				-0.8
67,891	-				+2.7
67,891	-				-1.3
67,891	-				-2.2
67,891	-				-1.1
67,997	-				-0.0
68,014	+		GFF6278	0.11	+3.2
68,014	+		GFF6278	0.11	-2.4
68,014	+		GFF6278	0.11	-1.1
68,014	+		GFF6278	0.11	-0.7
68,015	-		GFF6278	0.11	-0.7
68,015	-		GFF6278	0.11	+0.1
68,015	-		GFF6278	0.11	-1.7
68,115	+		GFF6278	0.17	+0.5
68,115	+		GFF6278	0.17	+1.3
68,115	+		GFF6278	0.17	+0.2
68,115	+		GFF6278	0.17	+0.5
68,115	+		GFF6278	0.17	+0.9
68,115	+		GFF6278	0.17	+0.7
68,115	+		GFF6278	0.17	+1.4
68,116	-		GFF6278	0.17	+0.8
68,116	-		GFF6278	0.17	+0.9
68,116	-		GFF6278	0.17	+0.9
68,116	-		GFF6278	0.17	-0.0
68,116	-		GFF6278	0.17	+0.6
68,116	-		GFF6278	0.17	-1.6
68,116	-		GFF6278	0.17	-1.0
68,116	-		GFF6278	0.17	+0.9
68,116	-		GFF6278	0.17	+0.4
68,116	-		GFF6278	0.17	-0.8
68,116	-		GFF6278	0.17	+1.0
68,116	-		GFF6278	0.17	-1.1
68,175	+		GFF6278	0.20	+0.5
68,175	+		GFF6278	0.20	-1.1
68,175	+		GFF6278	0.20	-1.2
68,175	+		GFF6278	0.20	-1.9
68,175	+		GFF6278	0.20	+1.3
68,176	-		GFF6278	0.20	-0.5
68,176	-		GFF6278	0.20	-0.5
68,176	-		GFF6278	0.20	+1.9
68,176	-		GFF6278	0.20	+0.9
68,244	+		GFF6278	0.24	-4.3
68,244	+		GFF6278	0.24	+0.4
68,354	+		GFF6278	0.30	+1.0
68,354	+		GFF6278	0.30	+0.5
68,354	+		GFF6278	0.30	+0.0
68,355	-		GFF6278	0.31	+1.3
68,355	-		GFF6278	0.31	-3.0
68,364	+		GFF6278	0.31	-0.5
68,364	+		GFF6278	0.31	+0.8
68,364	+		GFF6278	0.31	-1.2
68,364	+		GFF6278	0.31	-0.8
68,365	-		GFF6278	0.31	+0.2
68,365	-		GFF6278	0.31	-2.0
68,365	-		GFF6278	0.31	-0.3
68,544	+		GFF6278	0.41	+1.1
68,544	+		GFF6278	0.41	+3.5
68,544	+		GFF6278	0.41	-1.0
68,545	-		GFF6278	0.41	-0.5
68,545	-		GFF6278	0.41	-0.5
69,269	+		GFF6278	0.83	-0.7
69,269	+		GFF6278	0.83	+1.3
69,270	-		GFF6278	0.83	+3.2
69,270	-		GFF6278	0.83	-0.5
69,270	-		GFF6278	0.83	-1.6
69,270	-		GFF6278	0.83	+1.2
69,471	+				-0.1
69,471	+				-2.1
69,471	+				-1.3
69,471	+				-1.1
69,471	+				+1.5
69,471	+				+1.1
69,471	+				-1.8
69,472	-				-1.5
69,472	-				-1.6
69,472	-				+0.1
69,472	-				-0.3
69,472	-				-2.2
69,472	-				+1.2
69,662	+		GFF6279	0.12	-0.6
69,662	+		GFF6279	0.12	-0.8
69,779	+		GFF6279	0.25	+0.7
69,780	-		GFF6279	0.25	-1.1
70,151	+		GFF6279	0.65	-0.3
70,151	+		GFF6279	0.65	+0.1
70,151	+		GFF6279	0.65	+0.2
70,151	+		GFF6279	0.65	-1.4
70,151	+		GFF6279	0.65	-0.2
70,151	+		GFF6279	0.65	-0.1
70,152	-		GFF6279	0.65	+1.6
70,152	-		GFF6279	0.65	-0.8
70,152	-		GFF6279	0.65	-1.7
70,152	-		GFF6279	0.65	-0.0
70,152	-		GFF6279	0.65	+1.1
70,152	-		GFF6279	0.65	-1.0
70,223	+		GFF6279	0.73	-2.2
70,223	+		GFF6279	0.73	-0.4
70,223	+		GFF6279	0.73	-1.8
70,223	+		GFF6279	0.73	-2.0
70,223	+		GFF6279	0.73	+0.5
70,223	+		GFF6279	0.73	+1.1
70,223	+		GFF6279	0.73	+0.1
70,223	+		GFF6279	0.73	-1.7
70,223	+		GFF6279	0.73	-1.2
70,223	+		GFF6279	0.73	+0.2
70,223	+		GFF6279	0.73	+0.4
70,223	+		GFF6279	0.73	-0.7
70,223	+		GFF6279	0.73	-1.3
70,224	-		GFF6279	0.73	-0.9
70,224	-		GFF6279	0.73	+0.5
70,224	-		GFF6279	0.73	-0.2
70,224	-		GFF6279	0.73	-0.3
70,224	-		GFF6279	0.73	+1.0
70,224	-		GFF6279	0.73	-0.7
70,224	-		GFF6279	0.73	-2.0
70,224	-		GFF6279	0.73	-0.3
70,224	-		GFF6279	0.73	+0.5
70,396	+				-1.5
70,396	+				+0.4
70,396	+				+1.5
70,396	+				-0.4
70,396	+				-0.5
70,396	+				-2.9
70,397	-				+0.9
70,397	-				+2.5
70,397	-				-1.8
70,397	-				+1.5
70,397	-				+0.3
70,397	-				-1.5
70,397	-				-2.7
70,458	+				+0.4
70,458	+				-0.1
70,459	-				-2.2
70,459	-				+1.7
70,459	-				+0.0
70,459	-				-0.7
70,469	+				-1.6
70,469	+				-0.4
70,470	-				+0.5
70,470	-				-2.5
70,470	-				+0.7
70,540	+				+0.1
70,540	+				+1.3
70,540	+				-1.1
70,540	+				-0.0
70,540	+				-1.5
70,540	+				+1.4
70,540	+				+0.5
70,540	+				-0.5
70,540	+				-2.8
70,540	+				+0.3
70,540	+				+0.6
70,540	+				-0.8
70,540	+				-1.5
70,540	+				+1.9
70,540	+				-1.5
70,540	+				+0.6
70,540	+				+0.2
70,540	+				-0.8
70,541	-				-0.3
70,541	-				+0.9
70,541	-				-0.3
70,541	-				+0.9
70,541	-				-1.6
70,541	-				-0.3
70,541	-				+0.3
70,541	-				-1.3
70,541	-				+0.6
70,541	-				+1.3
70,541	-				+3.3
70,541	-				-1.7
70,541	-				-0.3
70,541	-				+0.5
70,541	-				+0.3
70,541	-				-0.4
70,541	-				-0.4
70,541	-				+0.1
70,541	-				+1.5
70,541	-				+1.0
70,541	-				-1.5
70,542	+				+1.0
70,542	+				-0.8
70,543	-				+2.2
70,543	-				+0.5
70,543	-				+0.2
70,543	-				-2.6