Strain Fitness in Variovorax sp. SCN45 around GFF6225

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
6,133	+		GFF6224	0.35	-0.7
6,133	+		GFF6224	0.35	-1.0
6,133	+		GFF6224	0.35	+2.7
6,133	+		GFF6224	0.35	+0.5
6,134	-		GFF6224	0.36	-1.1
6,134	-		GFF6224	0.36	+0.9
6,134	-		GFF6224	0.36	+0.8
6,644	-		GFF6224	0.74	-1.7
6,644	-		GFF6224	0.74	+2.1
6,872	-				-1.7
6,872	-				-2.4
7,072	-				-1.5
7,079	-				-2.4
7,112	+				-0.1
7,112	+				-1.8
7,113	-				-1.2
7,163	+				-0.5
7,163	+				+0.9
7,163	+				+2.5
7,163	+				+0.3
7,164	-				-0.8
7,164	-				-0.1
7,165	+				-1.3
7,250	+		GFF6225	0.12	-0.9
7,250	+		GFF6225	0.12	-0.2
7,298	+		GFF6225	0.16	-0.9
7,305	-		GFF6225	0.17	+1.7
7,916	+		GFF6225	0.74	-0.4
7,916	+		GFF6225	0.74	-0.5
7,916	+		GFF6225	0.74	+0.5
7,916	+		GFF6225	0.74	+0.7
7,917	-		GFF6225	0.75	-2.7
7,917	-		GFF6225	0.75	-1.8
7,917	-		GFF6225	0.75	-1.2
7,931	+		GFF6225	0.76	+1.5
7,931	+		GFF6225	0.76	+2.5
7,932	-		GFF6225	0.76	+0.9
7,932	-		GFF6225	0.76	+0.2
8,434	+		GFF6226	0.25	-0.5
8,434	+		GFF6226	0.25	+1.0
8,434	+		GFF6226	0.25	-0.5
8,435	-		GFF6226	0.25	+2.5
8,435	-		GFF6226	0.25	+0.8
8,435	-		GFF6226	0.25	+1.3
8,435	-		GFF6226	0.25	+0.7
8,435	-		GFF6226	0.25	-1.0
8,435	-		GFF6226	0.25	-0.8
8,435	-		GFF6226	0.25	-0.0
8,435	-		GFF6226	0.25	+0.3
8,980	+		GFF6226	0.81	+0.7
8,981	-		GFF6226	0.81	+2.3