Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6130 and GFF6131 are separated by 141 nucleotides GFF6131 and GFF6132 overlap by 4 nucleotides GFF6132 and GFF6133 overlap by 4 nucleotides
GFF6130 - 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7), at 30,719 to 32,572
GFF6130
GFF6131 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 32,714 to 33,445
GFF6131
GFF6132 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 33,442 to 34,245
GFF6132
GFF6133 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 34,242 to 35,105
GFF6133
Position (kb) 32
33
34 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 32.702 kb on + strand at 32.703 kb on - strand at 32.727 kb on + strand at 32.728 kb on - strand at 32.805 kb on + strand, within GFF6131 at 32.805 kb on + strand, within GFF6131 at 32.805 kb on + strand, within GFF6131 at 32.805 kb on + strand, within GFF6131 at 32.805 kb on + strand, within GFF6131 at 32.805 kb on + strand, within GFF6131 at 32.806 kb on - strand, within GFF6131 at 32.806 kb on - strand, within GFF6131 at 32.806 kb on - strand, within GFF6131 at 32.806 kb on - strand, within GFF6131 at 32.806 kb on - strand, within GFF6131 at 32.806 kb on - strand, within GFF6131 at 33.066 kb on + strand, within GFF6131 at 33.066 kb on + strand, within GFF6131 at 33.066 kb on + strand, within GFF6131 at 33.066 kb on + strand, within GFF6131 at 33.066 kb on + strand, within GFF6131 at 33.066 kb on + strand, within GFF6131 at 33.066 kb on + strand, within GFF6131 at 33.066 kb on + strand, within GFF6131 at 33.066 kb on + strand, within GFF6131 at 33.067 kb on - strand, within GFF6131 at 33.067 kb on - strand, within GFF6131 at 33.067 kb on - strand, within GFF6131 at 33.067 kb on - strand, within GFF6131 at 33.067 kb on - strand, within GFF6131 at 33.067 kb on - strand, within GFF6131 at 33.067 kb on - strand, within GFF6131 at 33.067 kb on - strand, within GFF6131 at 33.117 kb on + strand, within GFF6131 at 33.118 kb on - strand, within GFF6131 at 33.494 kb on + strand at 33.495 kb on - strand at 33.777 kb on - strand, within GFF6132
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 32,702 + -0.8 32,703 - +3.4 32,727 + -2.2 32,728 - -0.8 32,805 + GFF6131 0.12 -1.6 32,805 + GFF6131 0.12 -0.5 32,805 + GFF6131 0.12 +0.5 32,805 + GFF6131 0.12 +0.7 32,805 + GFF6131 0.12 -0.9 32,805 + GFF6131 0.12 +0.8 32,806 - GFF6131 0.13 -0.9 32,806 - GFF6131 0.13 -1.9 32,806 - GFF6131 0.13 +1.2 32,806 - GFF6131 0.13 +0.1 32,806 - GFF6131 0.13 +2.4 32,806 - GFF6131 0.13 -2.9 33,066 + GFF6131 0.48 -0.9 33,066 + GFF6131 0.48 -0.0 33,066 + GFF6131 0.48 +1.5 33,066 + GFF6131 0.48 +0.1 33,066 + GFF6131 0.48 -0.1 33,066 + GFF6131 0.48 -0.5 33,066 + GFF6131 0.48 -0.1 33,066 + GFF6131 0.48 -0.4 33,066 + GFF6131 0.48 +0.1 33,067 - GFF6131 0.48 -1.2 33,067 - GFF6131 0.48 -0.8 33,067 - GFF6131 0.48 +0.7 33,067 - GFF6131 0.48 -3.1 33,067 - GFF6131 0.48 +0.8 33,067 - GFF6131 0.48 -0.9 33,067 - GFF6131 0.48 -0.9 33,067 - GFF6131 0.48 -2.0 33,117 + GFF6131 0.55 -2.0 33,118 - GFF6131 0.55 -2.2 33,494 + -1.5 33,495 - -1.5 33,777 - GFF6132 0.42 +1.6
Or see this region's nucleotide sequence