Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6082 and GFF6083 overlap by 20 nucleotides GFF6083 and GFF6084 overlap by 4 nucleotides GFF6084 and GFF6085 overlap by 4 nucleotides GFF6085 and GFF6086 are separated by 81 nucleotides
GFF6082 - MoxR-like ATPase in aerotolerance operon, at 144,126 to 145,139
GFF6082
GFF6083 - hypothetical protein PA3071, at 145,120 to 146,109
GFF6083
GFF6084 - Aerotolerance protein BatA, at 146,106 to 147,143
GFF6084
GFF6085 - Transcriptional regulator, AcrR family, at 147,140 to 147,727
GFF6085
GFF6086 - Putative short-chain dehydrogenase, at 147,809 to 148,660
GFF6086
Position (kb) 146
147
148 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 145.137 kb on + strand at 145.137 kb on + strand at 145.138 kb on - strand at 145.138 kb on - strand at 145.310 kb on - strand, within GFF6083 at 145.310 kb on - strand, within GFF6083 at 145.310 kb on - strand, within GFF6083 at 145.546 kb on + strand, within GFF6083 at 146.053 kb on - strand at 146.053 kb on - strand at 146.170 kb on - strand at 146.170 kb on - strand at 146.170 kb on - strand at 146.170 kb on - strand at 146.170 kb on - strand at 146.182 kb on + strand at 146.182 kb on + strand at 146.183 kb on - strand at 146.211 kb on + strand, within GFF6084 at 146.211 kb on + strand, within GFF6084 at 146.212 kb on - strand, within GFF6084 at 146.212 kb on - strand, within GFF6084 at 146.853 kb on + strand, within GFF6084 at 146.853 kb on + strand, within GFF6084 at 146.853 kb on + strand, within GFF6084 at 146.854 kb on - strand, within GFF6084 at 146.854 kb on - strand, within GFF6084 at 146.854 kb on - strand, within GFF6084 at 146.970 kb on + strand, within GFF6084 at 146.971 kb on - strand, within GFF6084 at 146.971 kb on - strand, within GFF6084 at 146.971 kb on - strand, within GFF6084 at 146.976 kb on + strand, within GFF6084 at 146.976 kb on + strand, within GFF6084 at 146.976 kb on + strand, within GFF6084 at 146.977 kb on - strand, within GFF6084 at 146.977 kb on - strand, within GFF6084 at 147.009 kb on + strand, within GFF6084 at 147.141 kb on + strand at 147.250 kb on - strand, within GFF6085 at 147.250 kb on - strand, within GFF6085 at 147.269 kb on + strand, within GFF6085 at 147.270 kb on - strand, within GFF6085 at 147.270 kb on - strand, within GFF6085 at 147.357 kb on + strand, within GFF6085 at 147.358 kb on - strand, within GFF6085 at 147.358 kb on - strand, within GFF6085 at 147.462 kb on + strand, within GFF6085 at 147.462 kb on + strand, within GFF6085 at 147.462 kb on + strand, within GFF6085 at 147.462 kb on + strand, within GFF6085 at 147.462 kb on + strand, within GFF6085 at 147.462 kb on + strand, within GFF6085 at 147.463 kb on - strand, within GFF6085 at 147.463 kb on - strand, within GFF6085 at 147.463 kb on - strand, within GFF6085 at 147.463 kb on - strand, within GFF6085 at 147.463 kb on - strand, within GFF6085 at 147.463 kb on - strand, within GFF6085 at 147.474 kb on + strand, within GFF6085 at 147.475 kb on - strand, within GFF6085 at 147.475 kb on - strand, within GFF6085 at 147.475 kb on - strand, within GFF6085 at 147.475 kb on - strand, within GFF6085 at 147.475 kb on - strand, within GFF6085 at 147.475 kb on - strand, within GFF6085 at 147.475 kb on - strand, within GFF6085 at 147.588 kb on + strand, within GFF6085 at 147.588 kb on + strand, within GFF6085 at 147.588 kb on + strand, within GFF6085 at 147.588 kb on + strand, within GFF6085 at 147.589 kb on - strand, within GFF6085 at 147.589 kb on - strand, within GFF6085 at 147.589 kb on - strand, within GFF6085 at 147.589 kb on - strand, within GFF6085 at 147.750 kb on + strand at 147.750 kb on + strand at 147.750 kb on + strand at 147.838 kb on + strand at 147.839 kb on - strand at 147.839 kb on - strand at 147.839 kb on - strand at 147.839 kb on - strand at 147.923 kb on + strand, within GFF6086 at 147.923 kb on + strand, within GFF6086 at 147.924 kb on - strand, within GFF6086 at 147.924 kb on - strand, within GFF6086 at 147.924 kb on - strand, within GFF6086 at 147.924 kb on - strand, within GFF6086 at 148.020 kb on - strand, within GFF6086
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 145,137 + +0.6 145,137 + -1.7 145,138 - +0.6 145,138 - -0.2 145,310 - GFF6083 0.19 -2.2 145,310 - GFF6083 0.19 -1.2 145,310 - GFF6083 0.19 -0.2 145,546 + GFF6083 0.43 -1.0 146,053 - -0.3 146,053 - -0.7 146,170 - +4.3 146,170 - +0.4 146,170 - -0.5 146,170 - +1.0 146,170 - -0.9 146,182 + -0.3 146,182 + -2.9 146,183 - +1.4 146,211 + GFF6084 0.10 +0.1 146,211 + GFF6084 0.10 -0.7 146,212 - GFF6084 0.10 +0.1 146,212 - GFF6084 0.10 +0.3 146,853 + GFF6084 0.72 -3.1 146,853 + GFF6084 0.72 -1.9 146,853 + GFF6084 0.72 -1.4 146,854 - GFF6084 0.72 -1.0 146,854 - GFF6084 0.72 -0.7 146,854 - GFF6084 0.72 +0.2 146,970 + GFF6084 0.83 -0.2 146,971 - GFF6084 0.83 -0.8 146,971 - GFF6084 0.83 -1.7 146,971 - GFF6084 0.83 -0.9 146,976 + GFF6084 0.84 -0.3 146,976 + GFF6084 0.84 -1.2 146,976 + GFF6084 0.84 -1.2 146,977 - GFF6084 0.84 -2.2 146,977 - GFF6084 0.84 +0.0 147,009 + GFF6084 0.87 -1.2 147,141 + -1.3 147,250 - GFF6085 0.19 +0.3 147,250 - GFF6085 0.19 +1.1 147,269 + GFF6085 0.22 -2.3 147,270 - GFF6085 0.22 -0.9 147,270 - GFF6085 0.22 -0.7 147,357 + GFF6085 0.37 -1.9 147,358 - GFF6085 0.37 +3.5 147,358 - GFF6085 0.37 -0.9 147,462 + GFF6085 0.55 -2.6 147,462 + GFF6085 0.55 -1.4 147,462 + GFF6085 0.55 +1.3 147,462 + GFF6085 0.55 -0.1 147,462 + GFF6085 0.55 +0.8 147,462 + GFF6085 0.55 +0.0 147,463 - GFF6085 0.55 +0.1 147,463 - GFF6085 0.55 -2.0 147,463 - GFF6085 0.55 +0.1 147,463 - GFF6085 0.55 -1.1 147,463 - GFF6085 0.55 -1.4 147,463 - GFF6085 0.55 -0.2 147,474 + GFF6085 0.57 -0.4 147,475 - GFF6085 0.57 -0.4 147,475 - GFF6085 0.57 -0.6 147,475 - GFF6085 0.57 +0.9 147,475 - GFF6085 0.57 -0.7 147,475 - GFF6085 0.57 -2.1 147,475 - GFF6085 0.57 -0.2 147,475 - GFF6085 0.57 +0.2 147,588 + GFF6085 0.76 -0.2 147,588 + GFF6085 0.76 -0.4 147,588 + GFF6085 0.76 +0.5 147,588 + GFF6085 0.76 -2.4 147,589 - GFF6085 0.76 -2.2 147,589 - GFF6085 0.76 +0.6 147,589 - GFF6085 0.76 -1.6 147,589 - GFF6085 0.76 -0.5 147,750 + -2.5 147,750 + -0.9 147,750 + -2.2 147,838 + +1.1 147,839 - -0.2 147,839 - +0.0 147,839 - -0.6 147,839 - -0.6 147,923 + GFF6086 0.13 +0.3 147,923 + GFF6086 0.13 -0.4 147,924 - GFF6086 0.13 +0.6 147,924 - GFF6086 0.13 -3.4 147,924 - GFF6086 0.13 +0.5 147,924 - GFF6086 0.13 +0.3 148,020 - GFF6086 0.25 -2.9
Or see this region's nucleotide sequence