Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6082 and GFF6083 overlap by 20 nucleotides GFF6083 and GFF6084 overlap by 4 nucleotides
GFF6082 - MoxR-like ATPase in aerotolerance operon, at 144,126 to 145,139
GFF6082
GFF6083 - hypothetical protein PA3071, at 145,120 to 146,109
GFF6083
GFF6084 - Aerotolerance protein BatA, at 146,106 to 147,143
GFF6084
Position (kb) 145
146
147 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 144.189 kb on + strand at 144.402 kb on + strand, within GFF6082 at 144.402 kb on + strand, within GFF6082 at 144.402 kb on + strand, within GFF6082 at 144.402 kb on + strand, within GFF6082 at 144.403 kb on - strand, within GFF6082 at 144.618 kb on + strand, within GFF6082 at 144.618 kb on + strand, within GFF6082 at 144.618 kb on + strand, within GFF6082 at 144.619 kb on - strand, within GFF6082 at 144.792 kb on + strand, within GFF6082 at 144.792 kb on + strand, within GFF6082 at 144.792 kb on + strand, within GFF6082 at 144.792 kb on + strand, within GFF6082 at 144.792 kb on + strand, within GFF6082 at 144.792 kb on + strand, within GFF6082 at 144.793 kb on - strand, within GFF6082 at 144.967 kb on - strand, within GFF6082 at 144.967 kb on - strand, within GFF6082 at 145.032 kb on + strand, within GFF6082 at 145.032 kb on + strand, within GFF6082 at 145.033 kb on - strand, within GFF6082 at 145.033 kb on - strand, within GFF6082 at 145.137 kb on + strand at 145.137 kb on + strand at 145.138 kb on - strand at 145.138 kb on - strand at 145.310 kb on - strand, within GFF6083 at 145.310 kb on - strand, within GFF6083 at 145.310 kb on - strand, within GFF6083 at 145.546 kb on + strand, within GFF6083 at 146.053 kb on - strand at 146.053 kb on - strand at 146.170 kb on - strand at 146.170 kb on - strand at 146.170 kb on - strand at 146.170 kb on - strand at 146.170 kb on - strand at 146.182 kb on + strand at 146.182 kb on + strand at 146.183 kb on - strand at 146.211 kb on + strand, within GFF6084 at 146.211 kb on + strand, within GFF6084 at 146.212 kb on - strand, within GFF6084 at 146.212 kb on - strand, within GFF6084 at 146.853 kb on + strand, within GFF6084 at 146.853 kb on + strand, within GFF6084 at 146.853 kb on + strand, within GFF6084 at 146.854 kb on - strand, within GFF6084 at 146.854 kb on - strand, within GFF6084 at 146.854 kb on - strand, within GFF6084 at 146.970 kb on + strand, within GFF6084 at 146.971 kb on - strand, within GFF6084 at 146.971 kb on - strand, within GFF6084 at 146.971 kb on - strand, within GFF6084 at 146.976 kb on + strand, within GFF6084 at 146.976 kb on + strand, within GFF6084 at 146.976 kb on + strand, within GFF6084 at 146.977 kb on - strand, within GFF6084 at 146.977 kb on - strand, within GFF6084 at 147.009 kb on + strand, within GFF6084
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 144,189 + -0.0 144,402 + GFF6082 0.27 -0.6 144,402 + GFF6082 0.27 +1.4 144,402 + GFF6082 0.27 -0.4 144,402 + GFF6082 0.27 +0.1 144,403 - GFF6082 0.27 -1.9 144,618 + GFF6082 0.49 -3.2 144,618 + GFF6082 0.49 +0.1 144,618 + GFF6082 0.49 +0.4 144,619 - GFF6082 0.49 -0.7 144,792 + GFF6082 0.66 -1.9 144,792 + GFF6082 0.66 +0.5 144,792 + GFF6082 0.66 -2.2 144,792 + GFF6082 0.66 -1.3 144,792 + GFF6082 0.66 +0.2 144,792 + GFF6082 0.66 +2.7 144,793 - GFF6082 0.66 -2.1 144,967 - GFF6082 0.83 +2.5 144,967 - GFF6082 0.83 -0.7 145,032 + GFF6082 0.89 -1.4 145,032 + GFF6082 0.89 -1.4 145,033 - GFF6082 0.89 -1.9 145,033 - GFF6082 0.89 -0.7 145,137 + +0.6 145,137 + -1.7 145,138 - +0.6 145,138 - -0.2 145,310 - GFF6083 0.19 -2.2 145,310 - GFF6083 0.19 -1.2 145,310 - GFF6083 0.19 -0.2 145,546 + GFF6083 0.43 -1.0 146,053 - -0.3 146,053 - -0.7 146,170 - +4.3 146,170 - +0.4 146,170 - -0.5 146,170 - +1.0 146,170 - -0.9 146,182 + -0.3 146,182 + -2.9 146,183 - +1.4 146,211 + GFF6084 0.10 +0.1 146,211 + GFF6084 0.10 -0.7 146,212 - GFF6084 0.10 +0.1 146,212 - GFF6084 0.10 +0.3 146,853 + GFF6084 0.72 -3.1 146,853 + GFF6084 0.72 -1.9 146,853 + GFF6084 0.72 -1.4 146,854 - GFF6084 0.72 -1.0 146,854 - GFF6084 0.72 -0.7 146,854 - GFF6084 0.72 +0.2 146,970 + GFF6084 0.83 -0.2 146,971 - GFF6084 0.83 -0.8 146,971 - GFF6084 0.83 -1.7 146,971 - GFF6084 0.83 -0.9 146,976 + GFF6084 0.84 -0.3 146,976 + GFF6084 0.84 -1.2 146,976 + GFF6084 0.84 -1.2 146,977 - GFF6084 0.84 -2.2 146,977 - GFF6084 0.84 +0.0 147,009 + GFF6084 0.87 -1.2
Or see this region's nucleotide sequence