Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5809 and GFF5810 are separated by 4 nucleotides GFF5810 and GFF5811 overlap by 4 nucleotides
GFF5809 - Outer membrane factor (OMF) lipoprotein associated wth MdtABC efflux system, at 184,972 to 186,465
GFF5809
GFF5810 - Multidrug efflux system MdtABC-TolC, membrane fusion component MdtA, at 186,470 to 187,705
GFF5810
GFF5811 - Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtB-like, at 187,702 to 190,872
GFF5811
Position (kb) 186
187
188 Strain fitness (log2 ratio) -2
-1
0
1
2 at 185.515 kb on + strand, within GFF5809 at 185.515 kb on + strand, within GFF5809 at 185.515 kb on + strand, within GFF5809 at 185.516 kb on - strand, within GFF5809 at 185.575 kb on + strand, within GFF5809 at 185.609 kb on - strand, within GFF5809 at 185.953 kb on + strand, within GFF5809 at 185.953 kb on + strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.954 kb on - strand, within GFF5809 at 185.956 kb on + strand, within GFF5809 at 186.139 kb on + strand, within GFF5809 at 186.139 kb on + strand, within GFF5809 at 186.139 kb on + strand, within GFF5809 at 186.139 kb on + strand, within GFF5809 at 186.140 kb on - strand, within GFF5809 at 186.140 kb on - strand, within GFF5809 at 186.298 kb on + strand, within GFF5809 at 186.299 kb on - strand, within GFF5809 at 186.299 kb on - strand, within GFF5809 at 186.299 kb on - strand, within GFF5809 at 186.686 kb on + strand, within GFF5810 at 186.914 kb on + strand, within GFF5810 at 186.914 kb on + strand, within GFF5810 at 186.915 kb on - strand, within GFF5810 at 187.026 kb on - strand, within GFF5810 at 187.026 kb on - strand, within GFF5810 at 187.254 kb on - strand, within GFF5810 at 187.475 kb on + strand, within GFF5810 at 187.475 kb on + strand, within GFF5810 at 187.475 kb on + strand, within GFF5810 at 187.476 kb on - strand, within GFF5810 at 187.476 kb on - strand, within GFF5810 at 187.476 kb on - strand, within GFF5810 at 187.476 kb on - strand, within GFF5810 at 187.604 kb on + strand at 187.604 kb on + strand at 187.604 kb on + strand at 187.604 kb on + strand at 187.604 kb on + strand at 187.604 kb on + strand at 188.436 kb on - strand, within GFF5811 at 188.592 kb on + strand, within GFF5811 at 188.593 kb on - strand, within GFF5811
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 185,515 + GFF5809 0.36 -2.4 185,515 + GFF5809 0.36 +0.8 185,515 + GFF5809 0.36 -0.7 185,516 - GFF5809 0.36 -0.5 185,575 + GFF5809 0.40 -0.1 185,609 - GFF5809 0.43 +0.7 185,953 + GFF5809 0.66 +0.4 185,953 + GFF5809 0.66 +1.3 185,954 - GFF5809 0.66 -1.2 185,954 - GFF5809 0.66 -2.1 185,954 - GFF5809 0.66 +2.1 185,954 - GFF5809 0.66 -0.0 185,954 - GFF5809 0.66 -1.3 185,954 - GFF5809 0.66 +2.3 185,956 + GFF5809 0.66 -2.3 186,139 + GFF5809 0.78 +0.5 186,139 + GFF5809 0.78 -0.3 186,139 + GFF5809 0.78 -0.2 186,139 + GFF5809 0.78 +1.4 186,140 - GFF5809 0.78 -0.1 186,140 - GFF5809 0.78 -1.9 186,298 + GFF5809 0.89 -0.7 186,299 - GFF5809 0.89 -2.2 186,299 - GFF5809 0.89 -1.1 186,299 - GFF5809 0.89 +0.7 186,686 + GFF5810 0.17 -1.9 186,914 + GFF5810 0.36 +0.3 186,914 + GFF5810 0.36 +0.6 186,915 - GFF5810 0.36 -0.6 187,026 - GFF5810 0.45 +0.4 187,026 - GFF5810 0.45 -0.2 187,254 - GFF5810 0.63 -2.0 187,475 + GFF5810 0.81 -0.1 187,475 + GFF5810 0.81 +0.7 187,475 + GFF5810 0.81 -1.1 187,476 - GFF5810 0.81 -1.6 187,476 - GFF5810 0.81 +0.3 187,476 - GFF5810 0.81 -2.3 187,476 - GFF5810 0.81 -1.0 187,604 + +1.2 187,604 + -1.4 187,604 + -1.8 187,604 + -2.4 187,604 + -2.1 187,604 + +1.4 188,436 - GFF5811 0.23 -0.7 188,592 + GFF5811 0.28 +1.8 188,593 - GFF5811 0.28 -1.2
Or see this region's nucleotide sequence