Strain Fitness in Variovorax sp. SCN45 around GFF5692

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5690 and GFF5691 overlap by 4 nucleotidesGFF5691 and GFF5692 are separated by 157 nucleotidesGFF5692 and GFF5693 are separated by 161 nucleotides GFF5690 - Glutamate/aspartate ABC transporter, ATP-binding protein GltL (TC 3.A.1.3.4), at 65,319 to 66,062 GFF5690 GFF5691 - Glutamate/aspartate ABC transporter, permease protein GltK (TC 3.A.1.3.4), at 66,059 to 66,769 GFF5691 GFF5692 - Glutamate/aspartate ABC transporter, permease protein GltJ (TC 3.A.1.3.4), at 66,927 to 67,622 GFF5692 GFF5693 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 67,784 to 68,611 GFF5693 Position (kb) 66 67 68Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 66.023 kb on - strandat 66.023 kb on - strandat 66.031 kb on + strandat 66.031 kb on + strandat 66.123 kb on + strandat 66.124 kb on - strandat 66.159 kb on + strand, within GFF5691at 66.159 kb on + strand, within GFF5691at 66.159 kb on + strand, within GFF5691at 66.159 kb on + strand, within GFF5691at 66.160 kb on - strand, within GFF5691at 66.160 kb on - strand, within GFF5691at 66.160 kb on - strand, within GFF5691at 66.173 kb on + strand, within GFF5691at 66.180 kb on + strand, within GFF5691at 66.180 kb on + strand, within GFF5691at 66.180 kb on + strand, within GFF5691at 66.180 kb on + strand, within GFF5691at 66.180 kb on + strand, within GFF5691at 66.181 kb on - strand, within GFF5691at 66.181 kb on - strand, within GFF5691at 66.181 kb on - strand, within GFF5691at 66.181 kb on - strand, within GFF5691at 66.181 kb on - strand, within GFF5691at 66.181 kb on - strand, within GFF5691at 66.258 kb on + strand, within GFF5691at 66.258 kb on + strand, within GFF5691at 66.258 kb on + strand, within GFF5691at 66.258 kb on + strand, within GFF5691at 66.258 kb on + strand, within GFF5691at 66.259 kb on - strand, within GFF5691at 66.259 kb on - strand, within GFF5691at 66.259 kb on - strand, within GFF5691at 66.259 kb on - strand, within GFF5691at 66.364 kb on - strand, within GFF5691at 66.528 kb on + strand, within GFF5691at 66.528 kb on + strand, within GFF5691at 66.529 kb on - strand, within GFF5691at 66.529 kb on - strand, within GFF5691at 66.529 kb on - strand, within GFF5691at 66.738 kb on + strandat 66.738 kb on + strandat 66.738 kb on + strandat 66.738 kb on + strandat 66.739 kb on - strandat 66.747 kb on + strandat 66.958 kb on + strandat 66.958 kb on + strandat 66.958 kb on + strandat 66.959 kb on - strandat 66.959 kb on - strandat 67.000 kb on + strand, within GFF5692at 67.000 kb on + strand, within GFF5692at 67.000 kb on + strand, within GFF5692at 67.001 kb on - strand, within GFF5692at 67.001 kb on - strand, within GFF5692at 67.001 kb on - strand, within GFF5692at 67.001 kb on - strand, within GFF5692at 67.069 kb on + strand, within GFF5692at 67.069 kb on + strand, within GFF5692at 67.069 kb on + strand, within GFF5692at 67.070 kb on - strand, within GFF5692at 67.070 kb on - strand, within GFF5692at 67.070 kb on - strand, within GFF5692at 67.070 kb on - strand, within GFF5692at 67.070 kb on - strand, within GFF5692at 67.070 kb on - strand, within GFF5692at 67.179 kb on + strand, within GFF5692at 67.202 kb on - strand, within GFF5692at 67.295 kb on - strand, within GFF5692at 67.342 kb on + strand, within GFF5692at 67.343 kb on - strand, within GFF5692at 67.343 kb on - strand, within GFF5692at 67.343 kb on - strand, within GFF5692at 67.343 kb on - strand, within GFF5692at 67.441 kb on + strand, within GFF5692at 67.441 kb on + strand, within GFF5692at 67.442 kb on - strand, within GFF5692at 67.582 kb on + strandat 67.582 kb on + strandat 67.582 kb on + strandat 67.583 kb on - strandat 67.583 kb on - strandat 67.606 kb on + strandat 67.607 kb on - strandat 67.635 kb on + strandat 67.635 kb on + strandat 67.635 kb on + strandat 67.636 kb on - strandat 67.636 kb on - strandat 67.636 kb on - strandat 67.636 kb on - strandat 67.653 kb on + strandat 67.653 kb on + strandat 67.654 kb on - strandat 67.851 kb on + strandat 67.852 kb on - strandat 67.995 kb on + strand, within GFF5693at 67.995 kb on + strand, within GFF5693at 67.995 kb on + strand, within GFF5693at 67.995 kb on + strand, within GFF5693at 67.996 kb on - strand, within GFF5693at 67.996 kb on - strand, within GFF5693at 67.996 kb on - strand, within GFF5693at 67.996 kb on - strand, within GFF5693at 67.996 kb on - strand, within GFF5693at 67.996 kb on - strand, within GFF5693at 68.026 kb on - strand, within GFF5693at 68.058 kb on + strand, within GFF5693at 68.058 kb on + strand, within GFF5693at 68.058 kb on + strand, within GFF5693at 68.059 kb on - strand, within GFF5693

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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66,023 - +0.2
66,023 - -2.9
66,031 + -2.6
66,031 + -0.3
66,123 + -1.1
66,124 - +0.9
66,159 + GFF5691 0.14 +0.9
66,159 + GFF5691 0.14 -3.2
66,159 + GFF5691 0.14 -1.4
66,159 + GFF5691 0.14 -0.9
66,160 - GFF5691 0.14 -1.9
66,160 - GFF5691 0.14 -0.3
66,160 - GFF5691 0.14 -1.6
66,173 + GFF5691 0.16 -0.8
66,180 + GFF5691 0.17 -1.3
66,180 + GFF5691 0.17 -1.1
66,180 + GFF5691 0.17 -2.2
66,180 + GFF5691 0.17 +0.3
66,180 + GFF5691 0.17 -0.2
66,181 - GFF5691 0.17 -1.3
66,181 - GFF5691 0.17 +0.4
66,181 - GFF5691 0.17 +0.8
66,181 - GFF5691 0.17 -1.8
66,181 - GFF5691 0.17 +0.7
66,181 - GFF5691 0.17 +1.3
66,258 + GFF5691 0.28 -0.7
66,258 + GFF5691 0.28 +0.4
66,258 + GFF5691 0.28 -0.3
66,258 + GFF5691 0.28 -0.2
66,258 + GFF5691 0.28 -0.5
66,259 - GFF5691 0.28 -2.8
66,259 - GFF5691 0.28 -1.1
66,259 - GFF5691 0.28 +0.2
66,259 - GFF5691 0.28 +0.0
66,364 - GFF5691 0.43 -1.4
66,528 + GFF5691 0.66 -2.9
66,528 + GFF5691 0.66 +0.6
66,529 - GFF5691 0.66 +1.6
66,529 - GFF5691 0.66 -1.1
66,529 - GFF5691 0.66 +2.1
66,738 + -1.1
66,738 + +1.5
66,738 + -1.0
66,738 + -2.0
66,739 - +0.7
66,747 + -0.1
66,958 + -0.1
66,958 + +2.3
66,958 + -0.4
66,959 - -0.4
66,959 - -0.4
67,000 + GFF5692 0.10 -0.6
67,000 + GFF5692 0.10 +0.3
67,000 + GFF5692 0.10 +0.6
67,001 - GFF5692 0.11 -0.9
67,001 - GFF5692 0.11 +0.1
67,001 - GFF5692 0.11 +1.3
67,001 - GFF5692 0.11 -1.3
67,069 + GFF5692 0.20 -1.3
67,069 + GFF5692 0.20 +0.1
67,069 + GFF5692 0.20 -0.5
67,070 - GFF5692 0.21 -2.1
67,070 - GFF5692 0.21 +1.5
67,070 - GFF5692 0.21 +0.4
67,070 - GFF5692 0.21 -0.5
67,070 - GFF5692 0.21 +0.3
67,070 - GFF5692 0.21 -0.7
67,179 + GFF5692 0.36 +0.1
67,202 - GFF5692 0.40 +0.1
67,295 - GFF5692 0.53 -1.8
67,342 + GFF5692 0.60 -1.5
67,343 - GFF5692 0.60 -1.2
67,343 - GFF5692 0.60 -1.7
67,343 - GFF5692 0.60 +0.7
67,343 - GFF5692 0.60 -3.0
67,441 + GFF5692 0.74 -1.3
67,441 + GFF5692 0.74 -0.5
67,442 - GFF5692 0.74 -0.7
67,582 + +0.4
67,582 + -2.4
67,582 + -0.9
67,583 - +1.9
67,583 - -0.3
67,606 + +0.9
67,607 - +0.1
67,635 + -1.3
67,635 + -2.1
67,635 + -0.6
67,636 - +2.0
67,636 - -0.7
67,636 - +0.2
67,636 - +2.3
67,653 + +0.3
67,653 + -1.9
67,654 - -1.4
67,851 + -1.4
67,852 - -0.7
67,995 + GFF5693 0.25 -0.2
67,995 + GFF5693 0.25 -1.4
67,995 + GFF5693 0.25 -0.3
67,995 + GFF5693 0.25 -0.9
67,996 - GFF5693 0.26 -0.7
67,996 - GFF5693 0.26 -1.4
67,996 - GFF5693 0.26 -0.7
67,996 - GFF5693 0.26 -0.4
67,996 - GFF5693 0.26 +0.5
67,996 - GFF5693 0.26 +0.1
68,026 - GFF5693 0.29 +0.0
68,058 + GFF5693 0.33 -0.9
68,058 + GFF5693 0.33 -1.7
68,058 + GFF5693 0.33 +0.2
68,059 - GFF5693 0.33 +1.3

Or see this region's nucleotide sequence